Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq20 89.7 4e-13
seq4 89.7 4e-13
>seq20
Length=382848
Score = 89.7 bits (98), Expect = 4e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || || || || || || |||||||||||
Sbjct 80823 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAG 80882
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| ||||||| |||| ||||||||||| || || || || |||
Sbjct 80883 CAGCTCGAGGACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACC 80936
>seq4
Length=1405664
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| ||||| || || ||||| || || || || ||
Sbjct 913493 AAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAG 913552
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| || || | || ||||||||||| || ||||| || ||| | ||
Sbjct 913553 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 913612
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || |||| | |||||||||
Sbjct 913613 CTCGTGCTGCGTCTCCGCGGAGGT 913636
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
||||||| || || || | |||| ||| | ||| || |||| || || || ||||
Sbjct 913763 TCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACA 913822
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
||||||| || || ||||| || || || | || || || ||||| ||| | |||||
Sbjct 913823 AGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACG 913882
Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435
||||| || ||| |||||||| || ||||| || ||| | || | || ||||
Sbjct 913883 GTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGTC 913942
Query 22436 TGCGCGGAGGT 22446
| |||||||||
Sbjct 913943 TCCGCGGAGGT 913953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727805613470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |