Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq17 114 3e-20 seq11 114 3e-20 seq9 114 3e-20 seq7 114 3e-20 seq2 114 3e-20 seq23 93.3 9e-14 seq5 86.0 1e-11 >seq17 Length=487578 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 213186 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 213245 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 213246 CCCCACATTGGGC 213258 >seq11 Length=953955 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 505813 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 505872 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 505873 CCCCACATTGGGC 505885 >seq9 Length=1185843 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 736443 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 736502 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 736503 CCCCACATTGGGC 736515 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 749305 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 749246 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 749245 CCCCACATTGGGC 749233 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 783878 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 783819 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 783818 CCCCACATTGGGC 783806 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 796838 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 796897 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 796898 CCCCACATTGGGC 796910 >seq7 Length=1219073 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 137069 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 137128 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 137129 CCCCACATTGGGC 137141 >seq2 Length=1546248 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 ||||| || || || || |||||||||||||| |||||| | |||||||| || || || Sbjct 87774 GGTTCGCTCTCCGGCGGATGGAAGATGAAGCTCGCCCTCGCCCGCGCCATCCT-CTTCGA 87716 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| ||||||||| ||||| |||||| ||||| Sbjct 87715 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 87656 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | ||| |||| ||||| |||||||| Sbjct 87655 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACGTCCATCATCGTCTCGCACGACTC 87596 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 ||| ||||| | ||| ||| | | |||| | ||| Sbjct 87595 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 87559 Score = 100 bits (110), Expect = 6e-16 Identities = 129/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || || || ||| | || ||||| ||||| |||| |||| | ||||||| Sbjct 87214 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 87155 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | |||||||| Sbjct 87154 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 87095 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct 87094 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCCCTCCAGTACAT 87039 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || || | ||||| || || ||| Sbjct 88122 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCTTACGGCGCAAAGATCCTCCTCAAC 88063 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| | |||||||||| |||| || |||||| || | ||| || || Sbjct 88062 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGTTCG 88003 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523 || ||| || || |||||||| || | ||||||||| | || || || ||| | | Sbjct 88002 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 87943 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | ||||| | || | || || ||||||||| ||||| Sbjct 87942 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 87904 >seq23 Length=148841 Score = 93.3 bits (102), Expect = 9e-14 Identities = 228/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || |||||||||||||| |||| || |||| || || | | || || || Sbjct 120197 GTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCATAGTCGGC 120256 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| || | || || || || || || ||| Sbjct 120257 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCCGCGGTCGGCGGCG 120316 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || |||| |||||||||||| |||||||| | ||| ||||| || Sbjct 120317 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 120375 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | ||||| ||| |||||||| || || || || || ||| ||||||||| Sbjct 120376 GTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 120435 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 120436 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 120495 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373 |||||| || ||||| ||| ||| |||| ||||| || ||| Sbjct 120496 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTG 120538 >seq5 Length=1325494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| | ||||||| ||||| ||||| Sbjct 1142669 ATGCGCGGTCTCTCGGGCGGACAGAAGGTCAAGGTCGTCATCGCCGCAGCCATGTGGTCC 1142728 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 | || || || |||| ||||||||||| ||||||| | |||||||||| Sbjct 1142729 AAGCCCCAGGTCCTCGTCCTCGACGAGCCGACCAACTTTTTGGACCGCGA 1142778 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 1142057 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTTCCC 1142116 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 | ||| ||| ||| || || ||| | || || || || ||||| |||||||| Sbjct 1142117 GATTCGGGACGCGTCGAGAAACACCCGAACCTCCGAATCGCCTATGTCGCCCAGCACGCC 1142176 Query 280299 TTCCACCACATCGAGAACCACCTGGA 280324 ||||||||||||||| | ||||| || Sbjct 1142177 TTCCACCACATCGAGCAGCACCTCGA 1142202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836299571958