Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq17 114 3e-20
seq11 114 3e-20
seq9 114 3e-20
seq7 114 3e-20
seq2 114 3e-20
seq23 93.3 9e-14
seq5 86.0 1e-11
>seq17
Length=487578
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 213186 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 213245
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 213246 CCCCACATTGGGC 213258
>seq11
Length=953955
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 505813 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 505872
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 505873 CCCCACATTGGGC 505885
>seq9
Length=1185843
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 736443 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 736502
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 736503 CCCCACATTGGGC 736515
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 749305 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 749246
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 749245 CCCCACATTGGGC 749233
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 783878 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 783819
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 783818 CCCCACATTGGGC 783806
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 796838 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 796897
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 796898 CCCCACATTGGGC 796910
>seq7
Length=1219073
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 137069 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 137128
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 137129 CCCCACATTGGGC 137141
>seq2
Length=1546248
Score = 114 bits (126), Expect = 3e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
||||| || || || || |||||||||||||| |||||| | |||||||| || || ||
Sbjct 87774 GGTTCGCTCTCCGGCGGATGGAAGATGAAGCTCGCCCTCGCCCGCGCCATCCT-CTTCGA 87716
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| ||||||||| ||||| |||||| |||||
Sbjct 87715 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 87656
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | ||| |||| ||||| ||||||||
Sbjct 87655 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACGTCCATCATCGTCTCGCACGACTC 87596
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
||| ||||| | ||| ||| | | |||| | |||
Sbjct 87595 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 87559
Score = 100 bits (110), Expect = 6e-16
Identities = 129/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | || || || ||| | || ||||| ||||| |||| |||| | |||||||
Sbjct 87214 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 87155
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| |||||| || || | ||||||||
Sbjct 87154 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 87095
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| |||||| ||| |||||
Sbjct 87094 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCCCTCCAGTACAT 87039
Score = 87.8 bits (96), Expect = 4e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||||||||| || || | ||||| || || |||
Sbjct 88122 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCTTACGGCGCAAAGATCCTCCTCAAC 88063
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
| || |||| | |||||||||| |||| || |||||| || | ||| || ||
Sbjct 88062 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGTTCG 88003
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523
|| ||| || || |||||||| || | ||||||||| | || || || ||| | |
Sbjct 88002 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 87943
Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563
| ||||| | || | || || ||||||||| |||||
Sbjct 87942 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 87904
>seq23
Length=148841
Score = 93.3 bits (102), Expect = 9e-14
Identities = 228/343 (66%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091
|| || |||||||||||||| |||| || |||| || || | | || || ||
Sbjct 120197 GTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCATAGTCGGC 120256
Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151
| | ||| | ||| | ||||| ||| || | || || || || || || |||
Sbjct 120257 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCCGCGGTCGGCGGCG 120316
Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210
||||| || || |||| |||||||||||| |||||||| | ||| ||||| ||
Sbjct 120317 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 120375
Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270
| ||||| ||| |||||||| || || || || || ||| |||||||||
Sbjct 120376 GTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 120435
Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330
| ||| ||| || || | | ||| ||||||| || | | |||||| || |
Sbjct 120436 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 120495
Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373
|||||| || ||||| ||| ||| |||| ||||| || |||
Sbjct 120496 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTG 120538
>seq5
Length=1325494
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772
|| |||||||| || || || ||||||||||| | ||||||| ||||| |||||
Sbjct 1142669 ATGCGCGGTCTCTCGGGCGGACAGAAGGTCAAGGTCGTCATCGCCGCAGCCATGTGGTCC 1142728
Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
| || || || |||| ||||||||||| ||||||| | ||||||||||
Sbjct 1142729 AAGCCCCAGGTCCTCGTCCTCGACGAGCCGACCAACTTTTTGGACCGCGA 1142778
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 1142057 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTTCCC 1142116
Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298
| ||| ||| ||| || || ||| | || || || || ||||| ||||||||
Sbjct 1142117 GATTCGGGACGCGTCGAGAAACACCCGAACCTCCGAATCGCCTATGTCGCCCAGCACGCC 1142176
Query 280299 TTCCACCACATCGAGAACCACCTGGA 280324
||||||||||||||| | ||||| ||
Sbjct 1142177 TTCCACCACATCGAGCAGCACCTCGA 1142202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836299571958
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