Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq23 176 8e-39 seq6 141 2e-28 seq2 125 1e-23 seq4 114 2e-20 seq17 98.7 2e-15 seq11 98.7 2e-15 seq9 98.7 2e-15 seq7 98.7 2e-15 seq10 89.7 9e-13 seq15 87.8 3e-12 >seq23 Length=148841 Score = 176 bits (194), Expect = 8e-39 Identities = 292/420 (70%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||||||||| ||||||||||||||||||||| | || || |||| || | | Sbjct 120184 GTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTG 120243 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||||| |||| | | | || ||| | ||| | |||||||| |||| || Sbjct 120244 CGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCC 120303 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || || ||||| |||||| |||| || | |||||| ||||||||||||| Sbjct 120304 GCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGAT 120363 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGT--TGGATGGACCCCCCGTTGGCAATA 31061 ||||||||| | ||||||| | |||| |||||||| || || || || Sbjct 120364 GCGCTTGAGCTCGTCGGGGATGCC--GGGAACGTTCTGGATGGAGCCGTTGTGCGCGATG 120421 Query 31062 ATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAG 31121 ||| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 120422 ATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAG 120481 Query 31122 TTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATC 31181 |||||| || ||||||| || || ||| |||||| |||| | || || ||| | Sbjct 120482 GGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTAC 120541 Query 31182 GGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||||| | ||||| | | ||| ||| || ||| || ||||| |||||| ||||| Sbjct 120542 GGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCG 120601 >seq6 Length=1276814 Score = 141 bits (156), Expect = 2e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| || ||||| || | | ||| |||||||| |||||||| ||| Sbjct 942147 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCC 942206 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| ||||||||| ||||| ||||| | || || || || | |||| Sbjct 942207 TTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||||||||| |||||||| Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 |||||||||||| | | ||| |||| || ||||| ||||| || |||||||| || || Sbjct 941337 ATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 941396 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 | || || | || || || | |||||| || ||||| || | | || |||||||| Sbjct 941397 GCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 941456 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 || || || |||||||| || ||||| ||||||||| ||||||||||| | || || Sbjct 941457 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTC 941516 Query 68411 TACTTCCAAGGTGAT 68425 || || | |||||| Sbjct 941517 GACCTCGAGGGTGAT 941531 >seq2 Length=1546248 Score = 125 bits (138), Expect = 1e-23 Identities = 371/561 (66%), Gaps = 32/561 (6%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| || || |||||||||| | || | || ||||| Sbjct 87587 AGGAAACCAGAGTCGTGCGAGACGATGATGGACGTGCAGGTCTTGAGCGAGCAGAGGTAG 87646 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || |||||| ||||||| |||||| || || ||||| || || ||| Sbjct 87647 TTCTCGAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGG 87706 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || || | |||||||||||| | ||| | |||||||| ||||| || ||||| Sbjct 87707 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGGGCGAGCTTCATCTTCCATCCGCCGGAG 87766 Query 225629 AGGGAGCCGATTGAAACAGAGTGCT-TAGCT---TCGTCAA---AGCCGTACTCCAGGAG 225681 || || ||||| | | | | || ||| || || | ||| ||| || || Sbjct 87767 AGCGAACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCAACCG-ACT-CAAGAA 87821 Query 225682 CGTCTGGATAAT-----GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736 ||| | | | || || ||| | | || | | ||| || || ||||| Sbjct 87822 CGTTGCGGCACTCGTCCTCGTTCTTGAG-GATACGCTTG---TCCTTGAGGACGAACGAG 87877 Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACAC 225795 | | ||| | | ||||| | | || |||| | |||||| || ||||| | Sbjct 87878 A--TGATC-------GAGTTCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAA 87927 Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855 ||| |||| || | |||||||||||| | ||| || || | ||||| || | Sbjct 87928 CGTGCGGACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCAT 87987 Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915 ||||| |||||||| |||||| | || ||| ||||| | | || ||||||| Sbjct 87988 GAGGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 88047 Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975 | |||| | | ||| ||||||||||| | || || || || |||||| ||| | Sbjct 88048 GCGGAGGGTGGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTT 88107 Query 225976 GCACAGGTCCTCACCCTCCTC 225996 |||||||||||| |||||||| Sbjct 88108 GCACAGGTCCTCGCCCTCCTC 88128 >seq4 Length=1405664 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || |||||||| |||||||| || ||| | Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACC 913773 Query 68415 TCCAAGGTGAT 68425 || | ||||| Sbjct 913772 TCGAGAGTGAT 913762 >seq17 Length=487578 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 213187 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 213246 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 213247 CCCACATTGGGC 213258 >seq11 Length=953955 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 505814 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 505873 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 505874 CCCACATTGGGC 505885 >seq9 Length=1185843 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 736444 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 736503 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 736504 CCCACATTGGGC 736515 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 749304 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 749245 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 749244 CCCACATTGGGC 749233 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 783877 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 783818 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 783817 CCCACATTGGGC 783806 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 796839 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 796898 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 796899 CCCACATTGGGC 796910 >seq7 Length=1219073 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 137070 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 137129 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 137130 CCCACATTGGGC 137141 >seq10 Length=1020928 Score = 89.7 bits (98), Expect = 9e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 176730 TTCAGGTTGTTGAAGTACCGCTTGGCGTCATTGGCGTCGGAGGTACCCAGACCCTTGTAA 176789 |||| || | |||||||| ||| |||||||| |||||| || |||| |||||| | Sbjct 38506 TTCATGTCGCTGAAGTACTTCTTAGCGTCATTCGCGTCGCTCGTTCCCAACCCCTTGAAG 38447 Query 176790 TACTTAGTCTTCCAGGTAGAGACATCGGATGTCGCGGCCTTCCACTCTTCGAAATCCGGG 176849 ||||| |||||||| | | ||| ||| ||||||||||| | ||| | || ||| Sbjct 38446 TACTTGATCTTCCAGCCGCGGCCGTCGTCCGTCTCGGCCTTCCACGCCTCGTACTCGGGG 38387 Query 176850 ATGCTGTAGAACTCCACCATCTTGGTGCCCTTCTTGGCGACCACAATTGGAGTCACGAAG 176909 || || ||||| | | ||| |||||||| | |||||| || || | ||| Sbjct 38386 ATCGTGAAGAACGAGATCTCCTTCTTGCCCTTCGATACCTTCACAATGGGCGTGATGAAC 38327 Query 176910 CGCTTGAGGAACCCGGGGATCTCGAGCAGCGACGGGAAC 176948 |||||| || | || |||||||||||||||| Sbjct 38326 TCGACGAGGAAGTTTGGCAGCTTGAGCAGCGACGGGAAC 38288 Score = 84.2 bits (92), Expect = 4e-11 Identities = 153/221 (69%), Gaps = 11/221 (5%) Strand=Plus/Minus Query 177973 TCATGTTGTCGCTCCATGTCTGCAGGTACTTGCGTGTACCGTCGTAGATCTCCACATCAA 178032 ||||||||||||| | ||| |||||||| |||||| |||| || | Sbjct 36889 TCATGTTGTCGCTGAACACCTGGCGGTACTTGGACTCGCCGTCGGCTGTCTCGACGATGA 36830 Query 178033 ACTTCTTCGAAAAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGCCTGCGCCAGTCC 178092 ||| ||||| ||||||||| |||||| | ||||| || |||| || || ||| Sbjct 36829 ACTCGGTCGAATAGATGTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCA---CCCGTCG 36773 Query 178093 TCT---CCTGGGCATCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGATGAGCTCGG 178149 ||| ||| | | || || ||||| | ||||||||||| ||| ||||||||||||| Sbjct 36772 TCTTGGCCTCGTCGTCGTCGTAGTTCGAGGACGTGAGGAGGTTGCCAAAGATGAGCTCGG 36713 Query 178150 GCACATAG----CATCCTTCTTCGTGTTTCTCCACTGGGAT 178186 | | ||| | |||||||| ||| ||||| | ||||| Sbjct 36712 GGATGTAGATGCCCTCCTTCTT-GTGCTTCTCGATCGGGAT 36673 >seq15 Length=541629 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | ||||||||||| || ||||||||||| || Sbjct 262820 TTGGTCTTGCCCTCCATCGAGATCATTTCCATGAAGTCGAACGGGTTCTCGGCATTGTAC 262879 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100 |||| || ||||| || | | || || || ||||||||||||||||| | | Sbjct 262880 AGCTTCTCGTTCCCGAGCGCGACAAGCAGTCGATCCGCGACGAACTCGATGTACTGTCGC 262939 Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160 || ||| || ||||||||| |||| || | || | |||||| | ||| || | Sbjct 262940 ATGAGGGTCGCGTTCATGCCGATCAAGCCGACAGGCAAGGCGTCCGTCAGGAATTCTTGC 262999 Query 10161 TCGTTGGCGACCGCTTCCTCGACGAT 10186 ||| | |||| ||||| ||| ||| Sbjct 263000 TCGATCTCGACGGCTTCGGCGATGAT 263025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621962229360