Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq23 176 8e-39
seq6 141 2e-28
seq2 125 1e-23
seq4 114 2e-20
seq17 98.7 2e-15
seq11 98.7 2e-15
seq9 98.7 2e-15
seq7 98.7 2e-15
seq10 89.7 9e-13
seq15 87.8 3e-12
>seq23
Length=148841
Score = 176 bits (194), Expect = 8e-39
Identities = 292/420 (70%), Gaps = 4/420 (1%)
Strand=Plus/Plus
Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883
||||||||| ||||||||||||||||||||| | || || |||| || | |
Sbjct 120184 GTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTG 120243
Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943
| ||||| |||| | | | || ||| | ||| | |||||||| |||| ||
Sbjct 120244 CGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCC 120303
Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003
|||||| || || ||||| |||||| |||| || | |||||| |||||||||||||
Sbjct 120304 GCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGAT 120363
Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGT--TGGATGGACCCCCCGTTGGCAATA 31061
||||||||| | ||||||| | |||| |||||||| || || || ||
Sbjct 120364 GCGCTTGAGCTCGTCGGGGATGCC--GGGAACGTTCTGGATGGAGCCGTTGTGCGCGATG 120421
Query 31062 ATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAG 31121
||| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| ||
Sbjct 120422 ATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAG 120481
Query 31122 TTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATC 31181
|||||| || ||||||| || || ||| |||||| |||| | || || ||| |
Sbjct 120482 GGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTAC 120541
Query 31182 GGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
||||| | ||||| | | ||| ||| || ||| || ||||| |||||| |||||
Sbjct 120542 GGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCG 120601
>seq6
Length=1276814
Score = 141 bits (156), Expect = 2e-28
Identities = 126/158 (80%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|| || || | |||||| || ||||| || | | ||| |||||||| |||||||| |||
Sbjct 942147 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCC 942206
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| |||||||| ||||||||| ||||| ||||| | || || || || | ||||
Sbjct 942207 TTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||||||||| ||||||||
Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304
Score = 122 bits (134), Expect = 2e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290
|||||||||||| | | ||| |||| || ||||| ||||| || |||||||| || ||
Sbjct 941337 ATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 941396
Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350
| || || | || || || | |||||| || ||||| || | | || ||||||||
Sbjct 941397 GCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 941456
Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410
|| || || |||||||| || ||||| ||||||||| ||||||||||| | || ||
Sbjct 941457 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTC 941516
Query 68411 TACTTCCAAGGTGAT 68425
|| || | ||||||
Sbjct 941517 GACCTCGAGGGTGAT 941531
>seq2
Length=1546248
Score = 125 bits (138), Expect = 1e-23
Identities = 371/561 (66%), Gaps = 32/561 (6%)
Strand=Plus/Plus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||| ||||||||||| || || |||||||||| | || | || |||||
Sbjct 87587 AGGAAACCAGAGTCGTGCGAGACGATGATGGACGTGCAGGTCTTGAGCGAGCAGAGGTAG 87646
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || |||||| ||||||| |||||| || || ||||| || || |||
Sbjct 87647 TTCTCGAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGG 87706
Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628
||||| || || | |||||||||||| | ||| | |||||||| ||||| || |||||
Sbjct 87707 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGGGCGAGCTTCATCTTCCATCCGCCGGAG 87766
Query 225629 AGGGAGCCGATTGAAACAGAGTGCT-TAGCT---TCGTCAA---AGCCGTACTCCAGGAG 225681
|| || ||||| | | | | || ||| || || | ||| ||| || ||
Sbjct 87767 AGCGAACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCAACCG-ACT-CAAGAA 87821
Query 225682 CGTCTGGATAAT-----GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736
||| | | | || || ||| | | || | | ||| || || |||||
Sbjct 87822 CGTTGCGGCACTCGTCCTCGTTCTTGAG-GATACGCTTG---TCCTTGAGGACGAACGAG 87877
Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACAC 225795
| | ||| | | ||||| | | || |||| | |||||| || ||||| |
Sbjct 87878 A--TGATC-------GAGTTCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAA 87927
Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855
||| |||| || | |||||||||||| | ||| || || | ||||| || |
Sbjct 87928 CGTGCGGACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCAT 87987
Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915
||||| |||||||| |||||| | || ||| ||||| | | || |||||||
Sbjct 87988 GAGGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 88047
Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975
| |||| | | ||| ||||||||||| | || || || || |||||| ||| |
Sbjct 88048 GCGGAGGGTGGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTT 88107
Query 225976 GCACAGGTCCTCACCCTCCTC 225996
|||||||||||| ||||||||
Sbjct 88108 GCACAGGTCCTCGCCCTCCTC 88128
>seq4
Length=1405664
Score = 114 bits (126), Expect = 2e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || |||||||| |||||||| || ||| |
Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || |||||||| ||
Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| |||||||| ||||||||||| | || || ||
Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACC 913773
Query 68415 TCCAAGGTGAT 68425
|| | |||||
Sbjct 913772 TCGAGAGTGAT 913762
>seq17
Length=487578
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 213187 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 213246
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 213247 CCCACATTGGGC 213258
>seq11
Length=953955
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 505814 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 505873
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 505874 CCCACATTGGGC 505885
>seq9
Length=1185843
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 736444 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 736503
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 736504 CCCACATTGGGC 736515
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 749304 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 749245
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 749244 CCCACATTGGGC 749233
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 783877 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 783818
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 783817 CCCACATTGGGC 783806
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 796839 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 796898
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 796899 CCCACATTGGGC 796910
>seq7
Length=1219073
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 137070 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 137129
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 137130 CCCACATTGGGC 137141
>seq10
Length=1020928
Score = 89.7 bits (98), Expect = 9e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 176730 TTCAGGTTGTTGAAGTACCGCTTGGCGTCATTGGCGTCGGAGGTACCCAGACCCTTGTAA 176789
|||| || | |||||||| ||| |||||||| |||||| || |||| |||||| |
Sbjct 38506 TTCATGTCGCTGAAGTACTTCTTAGCGTCATTCGCGTCGCTCGTTCCCAACCCCTTGAAG 38447
Query 176790 TACTTAGTCTTCCAGGTAGAGACATCGGATGTCGCGGCCTTCCACTCTTCGAAATCCGGG 176849
||||| |||||||| | | ||| ||| ||||||||||| | ||| | || |||
Sbjct 38446 TACTTGATCTTCCAGCCGCGGCCGTCGTCCGTCTCGGCCTTCCACGCCTCGTACTCGGGG 38387
Query 176850 ATGCTGTAGAACTCCACCATCTTGGTGCCCTTCTTGGCGACCACAATTGGAGTCACGAAG 176909
|| || ||||| | | ||| |||||||| | |||||| || || | |||
Sbjct 38386 ATCGTGAAGAACGAGATCTCCTTCTTGCCCTTCGATACCTTCACAATGGGCGTGATGAAC 38327
Query 176910 CGCTTGAGGAACCCGGGGATCTCGAGCAGCGACGGGAAC 176948
|||||| || | || ||||||||||||||||
Sbjct 38326 TCGACGAGGAAGTTTGGCAGCTTGAGCAGCGACGGGAAC 38288
Score = 84.2 bits (92), Expect = 4e-11
Identities = 153/221 (69%), Gaps = 11/221 (5%)
Strand=Plus/Minus
Query 177973 TCATGTTGTCGCTCCATGTCTGCAGGTACTTGCGTGTACCGTCGTAGATCTCCACATCAA 178032
||||||||||||| | ||| |||||||| |||||| |||| || |
Sbjct 36889 TCATGTTGTCGCTGAACACCTGGCGGTACTTGGACTCGCCGTCGGCTGTCTCGACGATGA 36830
Query 178033 ACTTCTTCGAAAAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGCCTGCGCCAGTCC 178092
||| ||||| ||||||||| |||||| | ||||| || |||| || || |||
Sbjct 36829 ACTCGGTCGAATAGATGTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCA---CCCGTCG 36773
Query 178093 TCT---CCTGGGCATCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGATGAGCTCGG 178149
||| ||| | | || || ||||| | ||||||||||| ||| |||||||||||||
Sbjct 36772 TCTTGGCCTCGTCGTCGTCGTAGTTCGAGGACGTGAGGAGGTTGCCAAAGATGAGCTCGG 36713
Query 178150 GCACATAG----CATCCTTCTTCGTGTTTCTCCACTGGGAT 178186
| | ||| | |||||||| ||| ||||| | |||||
Sbjct 36712 GGATGTAGATGCCCTCCTTCTT-GTGCTTCTCGATCGGGAT 36673
>seq15
Length=541629
Score = 87.8 bits (96), Expect = 3e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | ||||||||||| || ||||||||||| ||
Sbjct 262820 TTGGTCTTGCCCTCCATCGAGATCATTTCCATGAAGTCGAACGGGTTCTCGGCATTGTAC 262879
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100
|||| || ||||| || | | || || || ||||||||||||||||| | |
Sbjct 262880 AGCTTCTCGTTCCCGAGCGCGACAAGCAGTCGATCCGCGACGAACTCGATGTACTGTCGC 262939
Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160
|| ||| || ||||||||| |||| || | || | |||||| | ||| || |
Sbjct 262940 ATGAGGGTCGCGTTCATGCCGATCAAGCCGACAGGCAAGGCGTCCGTCAGGAATTCTTGC 262999
Query 10161 TCGTTGGCGACCGCTTCCTCGACGAT 10186
||| | |||| ||||| ||| |||
Sbjct 263000 TCGATCTCGACGGCTTCGGCGATGAT 263025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621962229360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |