Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq23 235 1e-56
seq4 165 2e-35
seq15 123 5e-23
>seq23
Length=148841
Score = 235 bits (260), Expect = 1e-56
Identities = 545/811 (67%), Gaps = 14/811 (2%)
Strand=Plus/Plus
Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851
|||| |||||||||||||||||||||||| || ||||||| |||||| |||||||
Sbjct 121317 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 121376
Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910
| || |||||| | | || || || | || | | | ||||| ||||||
Sbjct 121377 GGCGTACCAGAGCTTCTGTGCGGGCACGGTGC-GCTTGGCGCGACCCTCCTTCTCGTACT 121435
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
| | || ||| ||||||| || ||||||||| || ||||| | || |
Sbjct 121436 TCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAG 121495
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
|||| | ||| ||| |||||| | || ||| | || ||||||||||||||| ||||
Sbjct 121496 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 121555
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
| || || ||| | ||| | | | ||| ||| ||| |||||| | || |
Sbjct 121556 ACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 121615
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || || | |||| ||||||| ||||| | ||||| |||| ||||| || |
Sbjct 121616 CGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGC 121675
Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210
||||||||||||||||||| || | | | |||| | | ||| || | || |
Sbjct 121676 GCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGA 121735
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
|||||||| |||| |||||| ||||| |||||| | ||| | | | || |||
Sbjct 121736 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGT 121795
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || | || | ||||| || |||||||||||| || || |||||| ||||
Sbjct 121796 GGATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGT 121855
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| || ||| |||||| | | || ||||| || || ||||| |
Sbjct 121856 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCG 121915
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450
| | || ||| | |||||| || || || ||||| |||||||| || ||| |
Sbjct 121916 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACA 121975
Query 245451 GGAACCCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508
|| |||||||| || | | | ||| |||| ||||||||||| ||| | ||| |
Sbjct 121976 TGAGATTGTACGTCTCGATGGCGCG-GTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 122032
Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564
| | |||||| ||||||| || |||| | || ||| | | ||| | ||
Sbjct 122033 CGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGTAGGT 122089
Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595
| || ||||||||||||||||| || |||||
Sbjct 122090 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 122120
Score = 152 bits (168), Expect = 1e-31
Identities = 602/940 (64%), Gaps = 68/940 (7%)
Strand=Plus/Plus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| |||||| || || |||||||||| || | ||||| |||||||| ||||||
Sbjct 120143 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGAGTGCGGAGGTAATACATGCCCGTCTTG 120202
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || | |||| ||| | |||||| | ||| |||| | ||| |
Sbjct 120203 AGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCATA-----------G 120251
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915
||| | || | || || |||||| ||||| |||||| | ||| | |||| || ||
Sbjct 120252 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACG-CGCCGCGGTC 120309
Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975
||||| | | ||||| | ||||||| || ||||| || | |||||||||||| ||||
Sbjct 120310 GGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTT 120369
Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035
||| | ||||||| || | |||||| | ||||| ||||| |||||| | | |
Sbjct 120370 GAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTGTT 120429
Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTT 244092
||| |||||||||||||| ||| || | ||| ||| ||| |||
Sbjct 120430 CTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 120486
Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152
|| ||||| ||||| || | || |||||||| ||||| |||| || ||||||
Sbjct 120487 GACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTC 120546
Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACAC 244209
|| ||| || ||| || ||||| || ||| |||||||| |||| | ||
Sbjct 120547 GAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCGCAGAC 120606
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
||| || ||| | | ||||||| |||| ||| ||| ||| | ||
Sbjct 120607 GAGC-GA--GTTGCGGATGCCGTGC-------TGCGCGATCT--TCTCCTTCAACTCGGC 120654
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| | || | |||||| | | ||| | ||||| ||| |||||| || || | |||
Sbjct 120655 CCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCT 120714
Query 244330 GACGGG---GCTGC------CCTCGTAGGTCGGGTAGGGACCG---TCGC---GCTGGGC 244374
|||| || || ||| ||| | |||||| ||| |||| | || ||
Sbjct 120715 CGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCAGGGTGCGC 120774
Query 244375 CA--GCTTA---------CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTC 244416
| || || || || | |||| ||||||| |||||| || ||
Sbjct 120775 GATGGCGTAGTCGCGTGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTTTC 120834
Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476
|||||| ||| | || ||| |||| | || ||| || | || | |||
Sbjct 120835 AAAGATCTGTACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCAT 120894
Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536
|||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| |||
Sbjct 120895 GAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 120954
Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596
||| || |||||||| ||||| ||||||| | ||| |||||| ||||
Sbjct 120955 TTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTACGTGAC 121014
Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636
| |||||||||| |||| || ||||||||||||
Sbjct 121015 AACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 121054
>seq4
Length=1405664
Score = 165 bits (182), Expect = 2e-35
Identities = 229/313 (73%), Gaps = 11/313 (4%)
Strand=Plus/Minus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | |||||||| || || | ||||||||||||||||| |||||
Sbjct 862296 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 862237
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924
| |||||| || | |||||| || ||| | |||||| ||||| |
Sbjct 862236 G---CACCTCGAGCGCC-GCCCTCACCCCGACACAGTCGAGCGCATCATTCGCGAGGCGG 862181
Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984
| ||||||||| ||||||||||||| || |||||||||| || |||||||||||
Sbjct 862180 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 862121
Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGG 43042
||||||||||||| |||||||| ||| ||| ||||||| | ||| ||| | | ||
Sbjct 862120 GCGACCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGC--GCTCGG 862063
Query 43043 TCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101
| || | ||||| ||| | | ||| ||||| |||||||||| |||||| |||
Sbjct 862062 CAACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGATGG 862004
Query 43102 AGGGCAAGACCAA 43114
|||||||||||||
Sbjct 862003 AGGGCAAGACCAA 861991
Score = 156 bits (172), Expect = 8e-33
Identities = 142/176 (81%), Gaps = 6/176 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691
|||||||| |||||||||| || |||||||||| ||||||| | |||| || |
Sbjct 862567 CCCTGCATTCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGA---CGACCGCTCC 862511
Query 42692 GT--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749
|| |||||||| | ||||| || ||| ||||||||||||||||||||||||| ||| |
Sbjct 862510 GTCTTCGGCGAGCGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCA 862451
Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
||||| |||||||||||||||||| || | | ||||||||||||||| |||||
Sbjct 862450 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTTCTC 862395
>seq15
Length=541629
Score = 123 bits (136), Expect = 5e-23
Identities = 226/319 (71%), Gaps = 23/319 (7%)
Strand=Plus/Minus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | ||||| || || |||| ||||||||||||||||| |||||
Sbjct 263125 GAACGAGCTCATCTCGCGCGACGAAGGCCTCCATACCGACTTTGCCTGCCTCCTCTTCTC 263066
Query 42866 GAGCCACCTCAGGC----ACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATCACGGA 42919
| |||||| || || ||| | | || |||||| | ||| ||||| | ||
Sbjct 263065 G---CACCTCGAGCGCCGACCAGCAC-CTAAC---CGGGTC--GCCCAGATCATCGCCGA 263015
Query 42920 GGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCAT 42979
||||| ||||||||| | || ||||| ||| | | |||| || | || |||||||
Sbjct 263014 AGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCTGTCGGCTTGATCGGCAT 262955
Query 42980 GAACCACGA-CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAG 43037
||| | ||| ||||||| | |||||||| ||| |||||| || | || | ||| |
Sbjct 262954 GAA-CGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGATCGACTGCTTGTCGCGC 262896
Query 43038 ATGGGTCTCAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCT 43095
||| || | || |||| | |||| | ||| |||||||| ||||| | ||||
Sbjct 262895 TCGGGAACGAGAAG-CTGTACA--ATGCCGAGAACCCGTTCGACTTCATGGAAATGATCT 262839
Query 43096 CGTTGGAGGGCAAGACCAA 43114
|| ||||||||||||||||
Sbjct 262838 CGATGGAGGGCAAGACCAA 262820
Score = 95.1 bits (104), Expect = 2e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||||||||| || |||||||| ||||| |||||||||| |||||| |
Sbjct 263679 CTCGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGAGAGGTTCTCG 263620
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529
||||||||| | ||||||||||| |||||||| ||||||||
Sbjct 263619 GCGGAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 263573
Score = 91.5 bits (100), Expect = 3e-13
Identities = 120/163 (74%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||| ||||||||||| ||||| | | ||| ||| ||
Sbjct 263350 CCCTGCATCGCCAAGAAGGCCGACTGGGCGCTGCGGTGGATTTCG-GACCCT-CGCGCCG 263293
Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750
| | | || | ||||| || || | || |||||||||||||||||||| ||| | |
Sbjct 263292 TCTTTGCGGAACGACTGGTTGCTTTCGCTGCTGTCGAGGGCATCTTCTTCTCCGGCTCGT 263233
Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGG 42793
||||||| || |||||||||||| || | | |||||||||
Sbjct 263232 TCGCCTCGATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGG 263190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338751438880
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