Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 235 1e-56 seq4 165 2e-35 seq15 123 5e-23 >seq23 Length=148841 Score = 235 bits (260), Expect = 1e-56 Identities = 545/811 (67%), Gaps = 14/811 (2%) Strand=Plus/Plus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| |||||||||||||||||||||||| || ||||||| |||||| ||||||| Sbjct 121317 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 121376 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || || || | || | | | ||||| |||||| Sbjct 121377 GGCGTACCAGAGCTTCTGTGCGGGCACGGTGC-GCTTGGCGCGACCCTCCTTCTCGTACT 121435 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | | || ||| ||||||| || ||||||||| || ||||| | || | Sbjct 121436 TCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAG 121495 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || ||||||||||||||| |||| Sbjct 121496 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 121555 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 | || || ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 121556 ACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 121615 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || || | |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 121616 CGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGC 121675 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 ||||||||||||||||||| || | | | |||| | | ||| || | || | Sbjct 121676 GCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGA 121735 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | ||| | | | || ||| Sbjct 121736 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGT 121795 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | || | ||||| || |||||||||||| || || |||||| |||| Sbjct 121796 GGATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGT 121855 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| | | || ||||| || || ||||| | Sbjct 121856 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCG 121915 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || ||||| |||||||| || ||| | Sbjct 121916 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACA 121975 Query 245451 GGAACCCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | | ||| |||| ||||||||||| ||| | ||| | Sbjct 121976 TGAGATTGTACGTCTCGATGGCGCG-GTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 122032 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||| | || Sbjct 122033 CGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGTAGGT 122089 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 122090 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 122120 Score = 152 bits (168), Expect = 1e-31 Identities = 602/940 (64%), Gaps = 68/940 (7%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || |||||||||| || | ||||| |||||||| |||||| Sbjct 120143 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGAGTGCGGAGGTAATACATGCCCGTCTTG 120202 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||| ||| | |||||| | ||| |||| | ||| | Sbjct 120203 AGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCATA-----------G 120251 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 ||| | || | || || |||||| ||||| |||||| | ||| | |||| || || Sbjct 120252 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACG-CGCCGCGGTC 120309 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | ||||| | ||||||| || ||||| || | |||||||||||| |||| Sbjct 120310 GGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTT 120369 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 ||| | ||||||| || | |||||| | ||||| ||||| |||||| | | | Sbjct 120370 GAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTGTT 120429 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTT 244092 ||| |||||||||||||| ||| || | ||| ||| ||| ||| Sbjct 120430 CTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 120486 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || |||||||| ||||| |||| || |||||| Sbjct 120487 GACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTC 120546 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACAC 244209 || ||| || ||| || ||||| || ||| |||||||| |||| | || Sbjct 120547 GAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCGCAGAC 120606 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||| || ||| | | ||||||| |||| ||| ||| ||| | || Sbjct 120607 GAGC-GA--GTTGCGGATGCCGTGC-------TGCGCGATCT--TCTCCTTCAACTCGGC 120654 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | || | |||||| | | ||| | ||||| ||| |||||| || || | ||| Sbjct 120655 CCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCT 120714 Query 244330 GACGGG---GCTGC------CCTCGTAGGTCGGGTAGGGACCG---TCGC---GCTGGGC 244374 |||| || || ||| ||| | |||||| ||| |||| | || || Sbjct 120715 CGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCAGGGTGCGC 120774 Query 244375 CA--GCTTA---------CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTC 244416 | || || || || | |||| ||||||| |||||| || || Sbjct 120775 GATGGCGTAGTCGCGTGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTTTC 120834 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 |||||| ||| | || ||| |||| | || ||| || | || | ||| Sbjct 120835 AAAGATCTGTACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCAT 120894 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| ||| Sbjct 120895 GAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 120954 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 ||| || |||||||| ||||| ||||||| | ||| |||||| |||| Sbjct 120955 TTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTACGTGAC 121014 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 | |||||||||| |||| || |||||||||||| Sbjct 121015 AACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 121054 >seq4 Length=1405664 Score = 165 bits (182), Expect = 2e-35 Identities = 229/313 (73%), Gaps = 11/313 (4%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 862296 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 862237 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || ||| | |||||| ||||| | Sbjct 862236 G---CACCTCGAGCGCC-GCCCTCACCCCGACACAGTCGAGCGCATCATTCGCGAGGCGG 862181 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 862180 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 862121 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGG 43042 ||||||||||||| |||||||| ||| ||| ||||||| | ||| ||| | | || Sbjct 862120 GCGACCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGC--GCTCGG 862063 Query 43043 TCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 | || | ||||| ||| | | ||| ||||| |||||||||| |||||| ||| Sbjct 862062 CAACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGATGG 862004 Query 43102 AGGGCAAGACCAA 43114 ||||||||||||| Sbjct 862003 AGGGCAAGACCAA 861991 Score = 156 bits (172), Expect = 8e-33 Identities = 142/176 (81%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691 |||||||| |||||||||| || |||||||||| ||||||| | |||| || | Sbjct 862567 CCCTGCATTCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGA---CGACCGCTCC 862511 Query 42692 GT--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 || |||||||| | ||||| || ||| ||||||||||||||||||||||||| ||| | Sbjct 862510 GTCTTCGGCGAGCGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCA 862451 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||||| |||||||||||||||||| || | | ||||||||||||||| ||||| Sbjct 862450 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTTCTC 862395 >seq15 Length=541629 Score = 123 bits (136), Expect = 5e-23 Identities = 226/319 (71%), Gaps = 23/319 (7%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || |||| ||||||||||||||||| ||||| Sbjct 263125 GAACGAGCTCATCTCGCGCGACGAAGGCCTCCATACCGACTTTGCCTGCCTCCTCTTCTC 263066 Query 42866 GAGCCACCTCAGGC----ACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATCACGGA 42919 | |||||| || || ||| | | || |||||| | ||| ||||| | || Sbjct 263065 G---CACCTCGAGCGCCGACCAGCAC-CTAAC---CGGGTC--GCCCAGATCATCGCCGA 263015 Query 42920 GGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCAT 42979 ||||| ||||||||| | || ||||| ||| | | |||| || | || ||||||| Sbjct 263014 AGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCTGTCGGCTTGATCGGCAT 262955 Query 42980 GAACCACGA-CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAG 43037 ||| | ||| ||||||| | |||||||| ||| |||||| || | || | ||| | Sbjct 262954 GAA-CGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGATCGACTGCTTGTCGCGC 262896 Query 43038 ATGGGTCTCAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCT 43095 ||| || | || |||| | |||| | ||| |||||||| ||||| | |||| Sbjct 262895 TCGGGAACGAGAAG-CTGTACA--ATGCCGAGAACCCGTTCGACTTCATGGAAATGATCT 262839 Query 43096 CGTTGGAGGGCAAGACCAA 43114 || |||||||||||||||| Sbjct 262838 CGATGGAGGGCAAGACCAA 262820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || |||||||| ||||| |||||||||| |||||| | Sbjct 263679 CTCGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGAGAGGTTCTCG 263620 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| | ||||||||||| |||||||| |||||||| Sbjct 263619 GCGGAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 263573 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| ||||||||||| ||||| | | ||| ||| || Sbjct 263350 CCCTGCATCGCCAAGAAGGCCGACTGGGCGCTGCGGTGGATTTCG-GACCCT-CGCGCCG 263293 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | | | || | ||||| || || | || |||||||||||||||||||| ||| | | Sbjct 263292 TCTTTGCGGAACGACTGGTTGCTTTCGCTGCTGTCGAGGGCATCTTCTTCTCCGGCTCGT 263233 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGG 42793 ||||||| || |||||||||||| || | | ||||||||| Sbjct 263232 TCGCCTCGATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGG 263190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338751438880