Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 9e-14 seq2 87.8 4e-12 >seq15 Length=541629 Score = 93.3 bits (102), Expect = 9e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 243499 CAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGC 243558 || |||||| | ||||| || || | ||| | |||||| | ||||| | || || Sbjct 263028 CAGATCATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCC-TGT 262970 Query 243559 CGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCG 243617 |||||| || ||||||||| | |||||| ||||||||||||| ||||| || || || Sbjct 262969 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGATCG 262910 Query 243618 CATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTAT 243677 | | ||||||| || | ||||| ||||||| || ||||||| || | ||| || Sbjct 262909 ACTGCTTGTCGCGCTCGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTCAT 262850 Query 243678 GGA 243680 ||| Sbjct 262849 GGA 262847 >seq2 Length=1546248 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 |||||||| || || | ||||||||| | || |||||||| || || || || |||| Sbjct 87947 GAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCCGAA 88006 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 ||||| | ||||| ||||||||||||| ||||||||| || Sbjct 88007 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 88047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879463035300