Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq23 181 1e-40 seq17 91.5 2e-13 seq18 87.8 2e-12 >seq23 Length=148841 Score = 181 bits (200), Expect = 1e-40 Identities = 489/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Plus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 |||| | || | | | ||||| ||| ||||| || ||||||| ||||||||| | | Sbjct 121384 CAGAGCTTCTGTG-CGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 ||| | | ||||| ||||| | |||| ||| || || |||| | |||||||| Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||| | ||| | || || ||| ||||||| |||||||||||| || ||||| || || Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||| | || || || | || || | || || || || | || | || Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 114945 || | || || ||||||||||| || ||||| | |||| || | | | || Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGA---ACGCGCCAGGGCGCTT 121679 Query 114946 ---ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 || |||||| || || | ||| ||| || | ||||| ||||| || ||||| Sbjct 121680 GTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGAT 121739 Query 115003 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGG 115060 || | || | ||| || || || ||| |||||| | | || | || || ||| Sbjct 121740 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGG 121797 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 || | ||| || || ||||| ||| ||||| |||| ||| | |||| || || Sbjct 121798 ATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCG 121857 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 ||||| || ||||||||||| |||| | | | |||||||| ||| | || || Sbjct 121858 TAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGG 121917 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACAT 115239 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 121918 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACAT 121976 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 || ||| ||||| | | || | |||||| || ||||| || |||| || ||| || Sbjct 121977 GAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCG 122036 Query 115300 CATAAACATGTATTGGGGT 115318 ||| | ||||| || ||| Sbjct 122037 CATGAGCATGTGCTGCGGT 122055 >seq17 Length=487578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855 || |||||| ||||| || | |||||||||||||| ||||| || || | ||||||| Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450 Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915 | | | || || || || || | ||||| | ||| ||||||| || ||||| ||| || Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510 Query 8916 GTCAGGGAGTTCGTTGAG 8933 ||| | ||||| || ||| Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528 >seq18 Length=451624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAA 11015 ||| |||| |||||||| || |||||||| | ||| ||||| || ||| || | Sbjct 187313 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 187254 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | || || || ||||| | ||||||||||||| || ||||| || || || | | Sbjct 187253 GGTGAA-GAGGTCGCGGACACGGCTGGCACCGACACCGACGAACATCTCGACGAACTCCG 187195 Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | ||||| || |||||||||| || ||| || ||| | ||| ||||||||| | Sbjct 187194 AGCCGGAAACGGAGAGGAAGGGGACGCCGGCTTCTCCTGCGGTCGCTTTGGCGAGGAGCG 187135 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 |||| || || || || || | ||| | || || || |||||| |||| || Sbjct 187134 TCTTGCCGGTTCCGGGAGGGCCGGAGAGGATAGCGCCGCGAGGGATCTTGGCGCC 187080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353316257040