Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq23 181 1e-40
seq17 91.5 2e-13
seq18 87.8 2e-12
>seq23
Length=148841
Score = 181 bits (200), Expect = 1e-40
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Plus
Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649
|| |||||||| |||||| | || | |||||||| |||| || ||| | || | |
Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383
Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708
|||| | || | | | ||||| ||| ||||| || ||||||| ||||||||| | |
Sbjct 121384 CAGAGCTTCTGTG-CGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442
Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768
||| | | ||||| ||||| | |||| ||| || || |||| | ||||||||
Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502
Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828
||| | ||| | || || ||| ||||||| |||||||||||| || ||||| || ||
Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562
Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888
|||| | || || || | || || | || || || || | || | ||
Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622
Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 114945
|| | || || ||||||||||| || ||||| | |||| || | | | ||
Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGA---ACGCGCCAGGGCGCTT 121679
Query 114946 ---ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002
|| |||||| || || | ||| ||| || | ||||| ||||| || |||||
Sbjct 121680 GTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGAT 121739
Query 115003 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGG 115060
|| | || | ||| || || || ||| |||||| | | || | || || |||
Sbjct 121740 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGG 121797
Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120
|| | ||| || || ||||| ||| ||||| |||| ||| | |||| || ||
Sbjct 121798 ATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCG 121857
Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180
||||| || ||||||||||| |||| | | | |||||||| ||| | || ||
Sbjct 121858 TAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGG 121917
Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACAT 115239
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 121918 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACAT 121976
Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299
|| ||| ||||| | | || | |||||| || ||||| || |||| || ||| ||
Sbjct 121977 GAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCG 122036
Query 115300 CATAAACATGTATTGGGGT 115318
||| | ||||| || |||
Sbjct 122037 CATGAGCATGTGCTGCGGT 122055
>seq17
Length=487578
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855
|| |||||| ||||| || | |||||||||||||| ||||| || || | |||||||
Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450
Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915
| | | || || || || || | ||||| | ||| ||||||| || ||||| ||| ||
Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510
Query 8916 GTCAGGGAGTTCGTTGAG 8933
||| | ||||| || |||
Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528
>seq18
Length=451624
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAA 11015
||| |||| |||||||| || |||||||| | ||| ||||| || ||| || |
Sbjct 187313 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 187254
Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075
| || || || ||||| | ||||||||||||| || ||||| || || || | |
Sbjct 187253 GGTGAA-GAGGTCGCGGACACGGCTGGCACCGACACCGACGAACATCTCGACGAACTCCG 187195
Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135
| ||||| || |||||||||| || ||| || ||| | ||| ||||||||| |
Sbjct 187194 AGCCGGAAACGGAGAGGAAGGGGACGCCGGCTTCTCCTGCGGTCGCTTTGGCGAGGAGCG 187135
Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
|||| || || || || || | ||| | || || || |||||| |||| ||
Sbjct 187134 TCTTGCCGGTTCCGGGAGGGCCGGAGAGGATAGCGCCGCGAGGGATCTTGGCGCC 187080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353316257040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |