Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq20 96.9 3e-15
seq6 95.1 1e-14
seq4 95.1 1e-14
>seq20
Length=382848
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || ||||||||||| | || |||||| |||| || ||||||||||||
Sbjct 80935 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 80876
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| | ||||| ||||||||||| || || || || || || || || || ||
Sbjct 80875 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 80823
>seq6
Length=1276814
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||| || | ||| ||||| | ||| || || || || |||||||| || ||
Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 941399
Query 64277 ACG-GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| | ||||| |||| || ||||||||||| || | || | |||||||||||||||||
Sbjct 941400 AAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 941459
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
||||| || || || || || ||
Sbjct 941460 GATTCCCTCCTTGTCCTGGATCTT 941483
>seq4
Length=1405664
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/129 (78%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTC 64290
||||| || || | ||||| ||||| || ||||||||||| || | | ||||| ||||
Sbjct 914376 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATC-GCTAAGCGTGCGTCCGTC 914318
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||||||||||||||| | || | ||||||||||||||||| || || || || ||
Sbjct 914317 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 914258
Query 64351 TTGTATTTT 64359
|| || ||
Sbjct 914257 CTGAATCTT 914249
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| || || | ||||| ||||| || ||||||||||| |
Sbjct 913636 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 913577
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || |||| || |||||||| || || | ||||| |||||||||||||||||
Sbjct 913576 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 913517
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
||| || || || || || || ||
Sbjct 913516 AATGCCCTCCTTGTCCTGAATCTT 913493
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| || || | ||||| ||||| || |||||||| ||
Sbjct 913953 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 913894
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| || ||||||||||| || | || | |||||||||||||||||
Sbjct 913893 GAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 913834
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
||||| || || || || || ||
Sbjct 913833 GATTCCCTCCTTGTCCTGGATCTT 913810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644562668720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |