Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq23 118 1e-21 seq4 100 3e-16 seq6 84.2 2e-11 >seq23 Length=148841 Score = 118 bits (130), Expect = 1e-21 Identities = 303/448 (68%), Gaps = 25/448 (6%) Strand=Plus/Plus Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCC 154079 |||||||||||||| || || | ||||| ||| | || || ||||| || ||| Sbjct 121630 ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCCC 121689 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || ||||||| |||| || | |||||| | ||||| | |||||| | |||| | | | Sbjct 121690 TGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAG 121749 Query 154140 GTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCA 154199 |||||| || ||| | |||| ||||| | | || | | || Sbjct 121750 TAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACCG 121809 Query 154200 ATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCC--AGCGTCCTGTAGATGCCG 154256 |||||||| || || ||| || ||| |||||| || | ||||| ||||||||| Sbjct 121810 ATGCCGCCTGCAGT-CTTGGAGATG--AGCGCACACGTCTTGAGCGTGTCGTAGATGCCC 121866 Query 154257 TCGATGCTATCGTCGCGGA-CGC--CGAGCAAGAAACACGAACACATTTGCGGAATGCG- 154312 ||||| ||||| | || |||| ||| ||||| | | ||||| |||| Sbjct 121867 TCGATCGAGTCGTCCTTCATCGTAACGAGGAAG---CACGACGAGAGCTGCGGG-TGCGG 121922 Query 154313 CGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGC 154371 ||| || || ||||| || || |||||||||||| | |||| |||| Sbjct 121923 CGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG----TACCGCTCCGACATGA 121978 Query 154372 G---GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCA 154428 | |||||| ||||||||| || || || |||||||| ||||||| ||||||||||| Sbjct 121979 GATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 122038 Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||||| || ||||| || Sbjct 122039 TGAGCATGTGCTGCGGTCGCTCGGCCAC 122066 >seq4 Length=1405664 Score = 100 bits (110), Expect = 3e-16 Identities = 214/311 (69%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| |||||| || | Sbjct 862295 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 862238 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | ||||| || | |||| | |||||||| Sbjct 862237 -CGCACCTCGAGCGCCGCCCTC-ACCCCGACACAGTCGAGCGCATCATTCGCGAGGCGGT 862180 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| ||||||| | || | |||||||| ||| |||| | ||||||||| | Sbjct 862179 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAG 862120 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || || |||||| ||||||||||||| || || || || || |||| |||| ||| Sbjct 862119 CGACCTC-ATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGCGCTC-GGC 862062 Query 52741 AGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | | | ||| || | || || ||||| || |||||| | | || ||| | ||| Sbjct 862061 AACGAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGATGGAG 862002 Query 52800 GGCAAGACCAA 52810 ||||||||||| Sbjct 862001 GGCAAGACCAA 861991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | ||||| || || |||||||||||||| Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| | ||||| ||||| ||||| Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||| || Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCGGACGACTCAAC 913774 Query 138567 CTCGA 138571 ||||| Sbjct 913773 CTCGA 913769 >seq6 Length=1276814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | ||| || | ||| | | |||||||| || |||||||||||||| Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 941400 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| | ||||| ||||| ||||| Sbjct 941401 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 941460 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | |||||| ||| Sbjct 941461 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 941520 Query 138568 TCGA 138571 |||| Sbjct 941521 TCGA 941524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262164275360