Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 seq4 109 5e-19 seq23 82.4 7e-11 seq14 82.4 7e-11 >seq6 Length=1276814 Score = 141 bits (156), Expect = 9e-29 Identities = 147/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| || | |||||||| ||| | ||||||||| || || || ||||| |||| Sbjct 941340 TCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 941399 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 941400 AAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 941459 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || ||||| |||| |||| |||||||| ||||| Sbjct 941460 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGA 941518 Query 127065 CTTCGACGGT 127074 | |||| ||| Sbjct 941519 CCTCGAGGGT 941528 Score = 116 bits (128), Expect = 4e-21 Identities = 122/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| ||||||| || ||||| |||||||| |||||||||||| Sbjct 942150 TCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTTG 942209 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||||| |||| |||| ||||| | | |||||| |||| ||| | Sbjct 942210 TCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGAAGACTCGACCTCGAGGGTGAT 942268 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || |||||||| || || || || ||||||||||||| Sbjct 942269 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGG 942306 >seq4 Length=1405664 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | || |||||||| || || |||||||||| Sbjct 914391 CCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTA 914332 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 914331 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 914272 Query 127007 ATGCCCTCCTTGTCC 127021 ||||||||||||||| Sbjct 914271 ATGCCCTCCTTGTCC 914257 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || ||||| |||| Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 || |||||||||||| ||| || ||||| | |||| |||||| Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTC 913786 Score = 102 bits (112), Expect = 8e-17 Identities = 214/315 (68%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC--- 47300 |||||||| |||||| | ||||| || || |||||| |||||||||| ||| || | Sbjct 862295 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 862236 Query 47301 -AACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTC-AGCGACATGTTTGCCGAAG 47358 | | | || | || | | | ||| ||| |||| ||| || ||| | Sbjct 862235 CACCTCGAGCGCCGCCCTCACCCCGA-------CACAGTCGAGCG-CATCATTCGCGAGG 862184 Query 47359 CCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAAT 47416 | |||| || ||| |||||| || ||||||| ||||||| || || | || || Sbjct 862183 CGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCA--TCGGCAT 862126 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 |||| || | ||| | |||||||||| || || ||||||||| |||| ||| ||| Sbjct 862125 GAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGCGCT 862066 Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 | ||||| ||||||| ||||| || ||||| |||||| | | || ||| | Sbjct 862065 CGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGAT 862006 Query 47537 CGAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 862005 GGAGGGCAAGACCAA 861991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 913635 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 913576 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 913575 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 913516 Query 127007 ATGCCCTCCTTGTCC 127021 ||||||||||||||| Sbjct 913515 ATGCCCTCCTTGTCC 913501 >seq23 Length=148841 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| |||||| | || ||| | ||||||| ||||| |||||||||||||| ||||| Sbjct 120457 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 120516 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | || | |||| ||| |||||||||||| ||||||| ||||| ||||| Sbjct 120517 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 120576 Query 146157 CGTCGTAGCGGTAGGCAT 146174 |||| ||||| ||||| Sbjct 120577 GGTCGACGCGGTCGGCAT 120594 >seq14 Length=625571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || ||||| || || ||| |||||| |||||||| | ||| || ||||||||||||||| Sbjct 125511 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGGATGCCCTCCTTGTCC 125452 Query 127022 GTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||| || ||||| |||| ||||| ||||||| |||||| |||| ||| Sbjct 125451 TGGATCTTGGCCTTGACGTTG-TCGACCGTGTCCGACGACTCGACCTCGAGGGT 125399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500574137120