Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq23 179 5e-40
seq17 91.5 2e-13
>seq23
Length=148841
Score = 179 bits (198), Expect = 5e-40
Identities = 487/736 (66%), Gaps = 11/736 (1%)
Strand=Plus/Plus
Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610
|| |||||||||||||| | || | |||||||| |||| || ||| | || | |
Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383
Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669
|| | | || | | | ||||| ||| ||||| || ||||||| ||||||||| | |
Sbjct 121384 CAGAGCTTCTGTG-CGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442
Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729
||| ||| ||||| ||||| |||| ||| || || |||| | || |||||
Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502
Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789
||| | ||| | || || ||| || |||| |||||||||||| || ||||| |||||
Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562
Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849
|||| | || || || | || || | || || || || | || | ||
Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622
Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA-- 116907
|| | || || ||||||||||| || ||||| | |||| | || |||
Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTT 121682
Query 116908 -CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966
|| |||||| || || | |||||| ||| | ||||| ||||| || ||||| ||
Sbjct 121683 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 121742
Query 116967 ATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTGACATCGTGGATG 117024
| || | ||| || || || ||| |||||| | | | || | || || ||||||
Sbjct 121743 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGGATC 121800
Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084
| ||| || || ||||| ||| ||||| | || ||| | |||| || |||||
Sbjct 121801 GAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAG 121860
Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144
|| || ||||||||||| |||| | | | ||||||||| ||| | || ||
Sbjct 121861 ATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGC 121920
Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 117203
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 121921 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 121979
Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263
|| ||| ||||| | | | | |||||| || ||||| || |||| | ||| |||||
Sbjct 121980 ATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 122039
Query 117264 AAACATGTATTGGGGT 117279
| ||||| || |||
Sbjct 122040 GAGCATGTGCTGCGGT 122055
>seq17
Length=487578
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770
|| |||||| ||||| || | |||||||||||||| ||||| || || | |||||||
Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450
Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830
| | | || || || || || | ||||| | ||| ||||||| || ||||| ||| ||
Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510
Query 10831 GTCAGGGAGTTCGTTGAG 10848
||| | ||||| || |||
Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506908584080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |