Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 179 5e-40 seq17 91.5 2e-13 >seq23 Length=148841 Score = 179 bits (198), Expect = 5e-40 Identities = 487/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Plus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| | || | |||||||| |||| || ||| | || | | Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || | | | ||||| ||| ||||| || ||||||| ||||||||| | | Sbjct 121384 CAGAGCTTCTGTG-CGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 ||| ||| ||||| ||||| |||| ||| || || |||| | || ||||| Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 ||| | ||| | || || ||| || |||| |||||||||||| || ||||| ||||| Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||| | || || || | || || | || || || || | || | || Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA-- 116907 || | || || ||||||||||| || ||||| | |||| | || ||| Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTT 121682 Query 116908 -CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| || || | |||||| ||| | ||||| ||||| || ||||| || Sbjct 121683 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 121742 Query 116967 ATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || | ||| || || || ||| |||||| | | | || | || || |||||| Sbjct 121743 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGGATC 121800 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | ||| || || ||||| ||| ||||| | || ||| | |||| || ||||| Sbjct 121801 GAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAG 121860 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || ||||||||||| |||| | | | ||||||||| ||| | || || Sbjct 121861 ATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGC 121920 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 117203 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 121921 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 121979 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 || ||| ||||| | | | | |||||| || ||||| || |||| | ||| ||||| Sbjct 121980 ATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 122039 Query 117264 AAACATGTATTGGGGT 117279 | ||||| || ||| Sbjct 122040 GAGCATGTGCTGCGGT 122055 >seq17 Length=487578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 || |||||| ||||| || | |||||||||||||| ||||| || || | ||||||| Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450 Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830 | | | || || || || || | ||||| | ||| ||||||| || ||||| ||| || Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510 Query 10831 GTCAGGGAGTTCGTTGAG 10848 ||| | ||||| || ||| Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506908584080