Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 113 7e-20 seq23 105 1e-17 >seq4 Length=1405664 Score = 113 bits (124), Expect = 7e-20 Identities = 213/312 (68%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || ||||| || |||| ||||||| | ||| ||| Sbjct 861991 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAATCGAACGGGTTCTCCTTGTGGTAG 862050 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| ||||| || ||||||| | ||| || || || |||||||| ||| Sbjct 862051 ATCTTCTCGTTGCCGAGCGCAACCAGCAAGCGGTCGGCAACGAACTCGATGTACTGGCAC 862110 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| || | || ||||||| | Sbjct 862111 ATGAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 862170 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG----TACCCCGGCTTGCC 159897 || ||||||||||| ||| | || || ||| ||| | |||| || Sbjct 862171 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACTGTGTCGGGGTGAGGGCGGC--GCT 862228 Query 159898 CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGA 159957 | | ||| | || |||||||| ||||||||| ||| || |||||||| || || Sbjct 862229 C-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGA 862283 Query 159958 GATGAACTCGTT 159969 ||||| |||||| Sbjct 862284 GATGAGCTCGTT 862295 >seq23 Length=148841 Score = 105 bits (116), Expect = 1e-17 Identities = 381/585 (65%), Gaps = 12/585 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||||| |||||| ||||| | | | | || || |||||||| Sbjct 120136 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGAGTGCGGAGGTAATACATGCC 120195 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC-GTTGG 203957 ||||| || ||||||| ||| ||||| | |||||| || | || | || || || Sbjct 120196 CGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCATAGTCGG 120255 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || | ||| | ||| || ||||| ||||| ||||| | |||| || || ||| Sbjct 120256 CGACGAG-AGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACG-CGCCGCGGTCGGCG 120313 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 || | | ||| | | ||||||||| ||||||||||| |||||| | | | | || | | Sbjct 120314 GCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGATG-CGCTTGAG 120372 Query 204077 --TGTTGAGGCACAT-CTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 || | || || | |||| || ||| |||||||||| || || | | | Sbjct 120373 CTCGTCGGGG---ATGCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTGTT 120429 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || || | || ||||| ||| || || || || | || |||||||| Sbjct 120430 CTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGAC 120489 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || ||| || || |||| || || | |||||| | | |||| ||| | || ||||| Sbjct 120490 GACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAA 120549 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||| ||||| ||||| ||| || || ||||| || || || || Sbjct 120550 CGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAG 120609 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| | |||| | || | | ||||| || |||||| || | Sbjct 120610 CGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTC 120669 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||| | ||| ||||| |||| |||| |||| ||| || || Sbjct 120670 CGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCT 120714 Score = 96.9 bits (106), Expect = 6e-15 Identities = 218/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 205261 AATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACC 205320 ||||||||||||||||||||| | | | ||| | ||||| || | |||||| || || Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688 Query 205321 CTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGC 205380 |||||| || ||| | | | |||| | || || ||||| || | | ||||| | Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748 Query 205381 GGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCC 205440 | |||||||||| | |||| |||||| || | | ||| ||| | || Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808 Query 205441 AATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTG 205499 || ||||| | | ||||| ||| | || ||| ||||| || ||| ||||||||| Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTG-AGCGTGTCGTAGATGCCCT 121867 Query 205500 CGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG---- 205555 |||| || |||||| || || || || ||||||| | |||| || | || Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGC 121923 Query 205556 GTGCCCGCGTGGAAGAGCGTGGG 205578 ||||| |||| ||||||||| || Sbjct 121924 GTGCCGGCGTTGAAGAGCGTCGG 121946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154822301280