Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 107 5e-18 seq9 96.9 8e-15 seq20 95.1 3e-14 seq6 89.7 1e-12 >seq4 Length=1405664 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| |||||||| || |||| |||||| || | | ||| Sbjct 913629 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 913570 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || ||||||||||||||||||||||| ||| ||| || Sbjct 913569 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCC 913510 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||||||||| Sbjct 913509 TCCTTGTCCTGAATCTT 913493 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GT 199467 || || | ||| || |||||||| |||||||| || |||| |||||| || || || || Sbjct 914385 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATC-GCTAAGCGT 914327 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||| ||||||||||| | ||||||||||| ||| || || Sbjct 914326 GCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCC 914267 Query 199528 TTCTCGCTCCTGAATCTT 199545 || ||||||||||| Sbjct 914266 CTCCTTGTCCTGAATCTT 914249 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| |||||||| || |||| ||||||||| | || Sbjct 913946 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTG 913887 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| | ||||||||||| ||| ||||| Sbjct 913886 CGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCC 913827 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||| ||| || |||| |||||| Sbjct 913826 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTC 913786 >seq9 Length=1185843 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | ||| | || || Sbjct 462266 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCC 462325 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| | ||||||||||| || Sbjct 462326 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGG 462366 >seq20 Length=382848 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| |||||| || | | || | || || Sbjct 80950 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 80891 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| |||||||| ||||||||||| || || || || ||| Sbjct 80890 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 80831 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| ||| |||| ||||| Sbjct 80830 TGGATCTTGGCCTTGACGTTGTCGATCGTGTC 80799 >seq6 Length=1276814 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCC 199473 |||| || || ||||| || |||||||| |||| ||||||||| || || || | || Sbjct 941353 CTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGACC 941411 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || || |||||||| || |||||||| | ||||||||||| ||| ||||| || Sbjct 941412 GTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTT 941471 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||||| ||||| ||| ||| |||| |||||| Sbjct 941472 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC 941507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921026012546