Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 seq6 129 7e-25 seq4 111 2e-19 seq20 105 8e-18 seq1 93.3 5e-14 seq14 87.8 2e-12 >seq9 Length=1185843 Score = 129 bits (142), Expect = 7e-25 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 462286 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 462345 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||||| || | || |||||||||| |||||| ||||| Sbjct 462346 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 462401 >seq6 Length=1276814 Score = 129 bits (142), Expect = 7e-25 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||| | || | |||||||||||| | ||| |||||| ||||| ||||||||| Sbjct 941338 TTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCG 941397 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || ||||| |||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 941398 CTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 941457 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | | |||||||||| |||||| ||||| Sbjct 941458 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 941491 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 |||| |||||||||||||| ||||| |||||||| |||||||||| || | || ||||| Sbjct 942148 CGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCT 942207 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||||| ||||| ||| | | | ||||||| || || || || | ||| Sbjct 942208 TGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || || || || || || ||||| Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||| ||| | || |||| | ||| ||||||||||||||| |||| | | ||||||||| Sbjct 578048 GTACTCGTAGAGGTTGCGGTTGTCCTCGAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTG 578107 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||||| ||| | || |||||||||| |||||| |||||| ||||| Sbjct 578108 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTCG 578153 >seq4 Length=1405664 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||||||| Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| |||||||||||||| ||||| ||||||||||||||||||| || Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||||| |||||| ||||| Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 913802 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||| || || | || ||| || ||||| ||||| ||| Sbjct 914393 TGCCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGC 914334 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||||||||| ||||||||||||||||||| | Sbjct 914333 TAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 914274 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || |||||||||| ||||| ||||| Sbjct 914273 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA 914241 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 913635 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 913576 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| || Sbjct 913575 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 913516 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| ||||| Sbjct 913515 ATGCCCTCCTTGTCCTGAATCTT 913493 >seq20 Length=382848 Score = 105 bits (116), Expect = 8e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || ||||| |||| ||||||||||||||||| || Sbjct 80930 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 80871 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 80870 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 80812 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 80811 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 80775 >seq1 Length=1645103 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 800109 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGG 800050 Query 46487 ACGCTCTCCTTGTCCATGATC 46507 | || |||||||||| |||| Sbjct 800049 ATGCCCTCCTTGTCCTGGATC 800029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| ||||||||||||||||||||||| | || |||||| Sbjct 441802 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGCCGGAATGCCATCCTTG 441743 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||| |||| | ||||| Sbjct 441742 TCCTGGATCTTGCTCTT-AACGTCG 441719 >seq14 Length=625571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||||||||||||| ||||| |||| ||||||||||| || ||| | || |||||||||| Sbjct 125511 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGGATGCCCTCCTTGTCC 125452 Query 46502 ATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||||| ||||| ||| | | |||||||| ||| || || || | ||||| Sbjct 125451 TGGATCTTGGCCTTGA-CGTTGTCGACCGTGTCCGACGACTCGACCTCGAGGGTGAT 125396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238131511760