Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 127 2e-24 seq6 118 1e-21 seq4 111 2e-19 seq20 93.3 4e-14 seq9 86.0 6e-12 >seq15 Length=541629 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| || || ||||||||| | | |||||| || | ||| | ||| Sbjct 263572 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCGATCTGCACCTCCGCCGAGAACCTCTC 263631 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || ||||||||||||||||| |||||||| ||||| || |||||| ||| Sbjct 263632 CACCAGGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCGAGGACGTGCGAGAT 263691 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||| || ||||||||||| ||| || |||||||| | | |||||| || | |||| Sbjct 263692 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 263749 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||||||||||||| | |||||| || |||||||| || || | |||||| ||| Sbjct 263181 AACGTCAAGCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAGCCG 263240 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || ||||||| ||||||||| || |||||||| ||||| || || | || ||| Sbjct 263241 GAGAAGAAGATGCCCTCGACAGCAGCGAAAGCAACCAGTCGTTCCGCAAAGACGGCGCGA 263300 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | | ||||| ||||||||||| |||||||| Sbjct 263301 GGGTCCGAAATCCACCGCAGCGCCCAGTCGGCCTT 263335 >seq6 Length=1276814 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | | |||| | || | || |||| || Sbjct 941531 ATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGA 941473 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| |||||||| || ||||||| ||||| | || | ||||||||| ||||| || || Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| || | ||||||||||||||| ||||| | ||||| ||| ||||| || | Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353 Query 38459 TTTGAGAGGCGG 38470 ||| | || || Sbjct 941352 GTTGCGCGGAGG 941341 >seq4 Length=1405664 Score = 111 bits (122), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 |||||| | |||||||| | |||||| || |||||||| || |||| ||||| ||| Sbjct 862397 GAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGAGCC 862456 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct 862457 GGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGAGCG 862516 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 | | | ||||||| |||||||| |||||||| |||| Sbjct 862517 GTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 862557 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGAC 38339 ||||| |||| || ||| | |||||| | | | | | || | || |||| ||| Sbjct 913762 ATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGAC 913821 Query 38340 AAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGAC 38399 || |||||||| || ||||||| ||||| | || | ||||||||| ||||| || ||| Sbjct 913822 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 913881 Query 38400 GAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||| |||| ||||||||||||||| || || |||| || || | ||||||||| Sbjct 913882 GGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 913941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| ||||||| ||||| ||||| | |||||| || ||||| || Sbjct 913502 GACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 913561 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || || || ||||||||||| || || |||| || || | |||||| Sbjct 913562 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 913621 Query 38457 CGT 38459 ||| Sbjct 913622 CGT 913624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| | || | ||| ||||| ||||| || Sbjct 914258 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAG 914317 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || | ||| ||||||||||| || || |||| || || | |||||| Sbjct 914318 GACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 914377 Query 38457 CGT 38459 ||| Sbjct 914378 CGT 914380 >seq20 Length=382848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | |||| | || | || |||| || Sbjct 80775 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 80833 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || || Sbjct 80834 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 80893 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||||||| || ||||||||||| ||||| |||| || || Sbjct 80894 CGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCA 80941 >seq9 Length=1185843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| | || | ||| ||||| Sbjct 462393 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 462334 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || |||||||||||||| ||||| |||| || || Sbjct 462333 CAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 462274 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 462273 CTCGTCCTCCGT 462262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172562417920