Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq11 271 1e-67 seq7 143 3e-29 seq8 136 5e-27 >seq11 Length=953955 Score = 271 bits (300), Expect = 1e-67 Identities = 638/959 (67%), Gaps = 7/959 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | ||||||||| ||||| | || ||||| ||||| ||||| || ||||| Sbjct 735145 TCGCCGGTGAGGATGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCCGGGTTG 735204 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || | || || | | | || | |||| Sbjct 735205 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAAACGAGCTTCTGGACACGCGGG 735264 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || | || | || |||||||| ||| Sbjct 735265 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCGATCTTCGAG 735324 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTC 7248 || || || || ||||| || ||||| | | | ||||| | |||| || || || Sbjct 735325 TCGCGGAGGACCTTCTCGACGGGCTCCAT-CGTCGAGCGGAAGAGGTCCTGGCAAAGCTC 735383 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || || ||||| || || || || || || | ||| ||| | | ||| || || Sbjct 735384 CTCGAAGCGGGCGCGGGTGATCGAGGTGTAAAAGTCGATGCCCTCGAAGAGCGAGTCGAT 735443 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| |||||||| || || || || Sbjct 735444 CTCGATGGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAGGCGGTGCG 735503 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||| || ||||| || | ||| || | || ||||| | || || || ||||| Sbjct 735504 GAGACGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTC 735563 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || ||||| || | ||| || || || Sbjct 735564 GGCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCTCC 735623 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| || ||||| || | || ||| | | | ||| || || ||||| Sbjct 735624 GGCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATGGTGAGGAGCGAGACGTCGAACGT 735683 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || |||| ||| || ||||| |||||| | ||| | || ||||| ||||| || Sbjct 735684 GCCTCCTCCCAAGTCGAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCC 735743 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 735744 GTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCTGAGAT 735803 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | || || || || || || || ||||| ||||| |||||||| || || || || Sbjct 735804 CAAGCCGGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCGGGAACGGTGAC 735863 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| |||| | ||| | ||||| || | || || | || ||||| ||| || Sbjct 735864 GACGGCGTTGGCGACCGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAG 735923 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||||| || ||||| || | || |||| ||| || || || | || || Sbjct 735924 GACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGA 735983 Query 7849 AATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 || ||||| || ||| || | ||| ||||| ||| ||| | ||||| ||| Sbjct 735984 GATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGG 736039 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTG 7966 ||||||| ||| | |||||| | ||||| || ||||| || || || || ||| Sbjct 736040 ACTGGACCTCGGCGTCGGCAAACTTGCGGCCGATGAGGCGCTTGGCGTCGAAGACGGTG 736098 >seq7 Length=1219073 Score = 143 bits (158), Expect = 3e-29 Identities = 420/641 (66%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || || | ||| || || || ||||| || |||||| || | ||| Sbjct 611559 TCAAAGTCCTCGCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACTTCGAACACACCG 611500 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || || ||||| || || || ||||| | | || | | Sbjct 611499 TCGTCGATGGAGAGGAGGGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 611440 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | |||| ||||| ||||||||||| || || ||||| || || Sbjct 611439 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 611383 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | || || ||| || || || || || | || || || || || || || Sbjct 611382 TTGACGACGCGGAGGACGTTGAGACCGGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 611323 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| |||||| || | ||||| Sbjct 611322 TGAGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCGAGG 611263 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||| || || | || ||||| ||| || ||||| | || | ||| || | || Sbjct 611262 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGCGTG 611203 Query 7817 AAC-TGTT--TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 ||| | || || | || ||| | | || || |||| ||| | | || | ||| Sbjct 611202 AACGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCGTCGTGCCG 611146 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| | | |||| ||| ||||||| | ||| ||| Sbjct 611145 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 611086 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||| || ||||| || ||||| | ||||| | |||||| ||| |||||| Sbjct 611085 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 611026 Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050 || || ||||| ||||| || || | | || | | || |||||||| || ||| Sbjct 611025 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGATGGAGGGGAGAAGGCGACGTAGGACGGG 610966 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 || | || || || |||||||| || || || || ||||| Sbjct 610965 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCG 610925 >seq8 Length=1204811 Score = 136 bits (150), Expect = 5e-27 Identities = 488/756 (65%), Gaps = 19/756 (3%) Strand=Plus/Plus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 161782 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 161841 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || || | ||| || | || || | | || || || ||||| Sbjct 161842 GACTTGTTGAGCTGGCGGCCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 161901 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || ||||| |||||||| | ||||| || | || || || || |||||||| | ||| Sbjct 161902 CGAGTCGAGCCACCGACGAGGACGATGTCGTCAACCTTGGACTTGTCGATCTTGGCGTCC 161961 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC--CT 7250 || ||||| || || | ||||| ||| | | || || Sbjct 161962 TTGAGGACACGCTCGACGGGGTCGAGGGTCGAGCGGAAG--GTCGCGGCGTTGATCTCCT 162019 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | || || ||||| | || || | |||| || ||| | | | | ||| || | | Sbjct 162020 CGAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCGACCT 162079 Query 7311 CAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 | | ||| || || || || || || | || ||||| || ||||| ||||||| || Sbjct 162080 CGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCGAGCG 162137 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||| || || || || | || || || || || ||| || || | |||||| Sbjct 162138 GAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAAACTC 162197 Query 7429 TTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487 | |||||| |||| |||| | || || || |||||||| | ||| || || | Sbjct 162198 CTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCACCAAGGTGGGTGTCTC 162256 Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547 | || ||||| ||||| |||||| || || || | | ||| ||||| |||| Sbjct 162257 CGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCGAACG 162316 Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT--CT 7598 | || || || ||||| || ||||| || || | || | | ||| || || Sbjct 162317 TGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTCGCCT 162376 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 |||||||||||||||| || ||||| || || || || || || || || || | Sbjct 162377 CGCCGAGACCGTACGCGATCGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACGTCGA 162436 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| || || | || || || |||| | || ||||| ||||| |||||||| | Sbjct 162437 GGCCAGCGATCGTGCCAGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAGGCAG 162496 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||||||| | ||| || | | |||| | ||| |||| Sbjct 162497 GGACCGTGATGACGGCCTTCTTGACCTCCTTGCCGA 162532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132498311920