Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 147 4e-30 seq4 123 5e-23 seq15 86.0 1e-11 >seq23 Length=148841 Score = 147 bits (162), Expect = 4e-30 Identities = 278/406 (68%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772 |||||||| ||| ||||||| ||||| |||| || ||||| || ||||| || Sbjct 121428 CTCGTACTTCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGC 121487 Query 213773 GGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGT 213831 || || || | |||| |||||| |||| | ||| ||| | || |||||| |||| Sbjct 121488 CTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGT 121546 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891 | || | ||||||||| ||||| ||| | | | ||| ||| || ||| | Sbjct 121547 CGGGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCT 121606 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 |||| || || || || || || ||||| |||||||||||||| | ||||||||| || | Sbjct 121607 TGCGGAGGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACG 121666 Query 213952 CGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 |||| | || | ||||| |||||||| || | ||| ||||| | | ||| | Sbjct 121667 CGCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGA 121726 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | ||| | | ||||| || | ||||| || || || || |||||||||| || | Sbjct 121727 GCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGC 121786 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGAT 214114 | ||| || ||||| || ||||| || || ||||||||| Sbjct 121787 GGATATTGTGGATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGAT 121832 Score = 113 bits (124), Expect = 8e-20 Identities = 606/965 (63%), Gaps = 75/965 (8%) Strand=Plus/Plus Query 212586 GTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCT 212645 ||||| || || |||||||| ||||| || ||||| |||||||| | |||||| | Sbjct 120176 GTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAC 120235 Query 212646 GTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGAC 212705 ||||| | | || | ||| | || | || || | ||| || ||| Sbjct 120236 GTGAGCTGCGCCA-----------TAGTCGGCGACGAG----AGGTGGACGTTGAGCGAC 120280 Query 212706 TGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAG 212765 || |||||| ||||| | | | | ||| ||||| | ||| |||| | |||| ||| Sbjct 120281 TGCGACTGGTCAATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAG 120340 Query 212766 AGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGC 212825 | |||||||||||||||| |||| ||||| || || |||| |||||| | |||||| Sbjct 120341 ATCTCCCACACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGG 120400 Query 212826 ACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTG 212882 | || || |||| ||| || | | ||| | |||||||| ||||| | | Sbjct 120401 ATGGAGCCGTTGTGCGCGATGATCGTGTTC---TTCATCGCGTCGTTCCACAGGCCGC-G 120456 Query 212883 GTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCT 212941 ||| | ||| || || |||||||| | |||||| || || | ||| || | Sbjct 120457 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 120516 Query 212942 CCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGC 213001 | ||| | ||| || ||||| ||||||| ||||||| || || ||||| Sbjct 120517 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 120576 Query 213002 AGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT 213061 || || || ||||| || || | ||| ||| | | ||||||| |||| Sbjct 120577 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGAT 120636 Query 213062 GAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCA 213121 | | ||| |||||||||| |||||||| | | | |||||||| Sbjct 120637 CTTCTCCTTCAACTCGGCCCAGTCCC---------ACAGGTCCGTGGGCGTGACGTTCCA 120687 Query 213122 CATGTCAAACTGCAAGATGCCTTTGCTCACGGG---GCTGC------CCTGGTAAGAGGA 213172 || ||| ||||||||| ||| | |||| |||| || || ||| ||| |||| Sbjct 120688 CAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGG 120747 Query 213173 GTAG-----GG----GCCA---TGCTCCTTG------------GCCAGCTCGCAGGACGC 213208 |||| || |||| ||| | || |||| ||||| |||| Sbjct 120748 GTAGTAGCCGGGCTCGCCAGGGTGCGCGATGGCGTAGTCGCGTGCCATGTCGCACGACGA 120807 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 || | || |||| |||||| |||||||| |||| |||||| | ||||| || Sbjct 120808 CTCGATCGCGGCGTGGTAGATCGTTTCAAAGATCTGTACGTTGAGGTGGCGCGCCTCGGG 120867 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328 || ||| |||| | | ||| | || || || ||||| || ||||| || Sbjct 120868 CGAGTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACC 120927 Query 213329 GATGGGTCTGTGTCTCAGGTT--AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 ||| || | ||| | | ||| | || | || ||||| | |||||| ||||| | Sbjct 120928 GATCGGGCGGTGGCGGAAGTTGCTGCGTTCG-GC-CTCCTTGACGGGGTAGTAGTTGACG 120985 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 |||||||| ||| |||||| ||| | || ||| ||| | | ||| | | Sbjct 120986 TCGATGATGCGGTTCAGGTTGTACGTGACAACCTTGACGACGTCGTGCAGCTTC------ 121039 Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506 ||||| |||| | |||| || | ||| ||| || ||||| || |||||||| Sbjct 121040 TTGAAGTCGTACTCGCCGTTCTTGATGAACGAAGGGAGCGCGATCGACGCGAGGTTGCAG 121099 Query 213507 ACGGC 213511 ||||| Sbjct 121100 ACGGC 121104 >seq4 Length=1405664 Score = 123 bits (136), Expect = 5e-23 Identities = 134/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 |||||| ||| || ||||| | || | || ||||||||||| || | |||||| || Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295 ||| ||||||||||||||||| || || || |||||| || | ||| |||| | | | Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||| |||||||||| |||||||| || |||||||||| ||||| || Sbjct 862514 GCGGTC--GTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTTCTGAATGCAGGG 862567 >seq15 Length=541629 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 263190 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAGCCGGAGAAGAAG 263249 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCTG 48308 |||||||| || || ||||| || || || |||| ||||| ||| ||| | Sbjct 263250 ATGCCCTCGACAGCAGCGAAAGCAACCAG--TCGTTCCGCAAAGACGGCGCGAGGGTCCG 263307 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | ||||| ||||||||||| |||||||| |||||| || Sbjct 263308 AAATCCACCGCAGCGCCCAGTCGGCCTTCTTGGCGATGCAGGG 263350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532357521920