Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq23 147 4e-30
seq4 123 5e-23
seq15 86.0 1e-11
>seq23
Length=148841
Score = 147 bits (162), Expect = 4e-30
Identities = 278/406 (68%), Gaps = 5/406 (1%)
Strand=Plus/Plus
Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772
|||||||| ||| ||||||| ||||| |||| || ||||| || ||||| ||
Sbjct 121428 CTCGTACTTCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGC 121487
Query 213773 GGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGT 213831
|| || || | |||| |||||| |||| | ||| ||| | || |||||| ||||
Sbjct 121488 CTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGT 121546
Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891
| || | ||||||||| ||||| ||| | | | ||| ||| || ||| |
Sbjct 121547 CGGGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCT 121606
Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951
|||| || || || || || || ||||| |||||||||||||| | ||||||||| || |
Sbjct 121607 TGCGGAGGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACG 121666
Query 213952 CGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008
|||| | || | ||||| |||||||| || | ||| ||||| | | ||| |
Sbjct 121667 CGCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGA 121726
Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068
| | ||| | | ||||| || | ||||| || || || || |||||||||| || |
Sbjct 121727 GCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGC 121786
Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGAT 214114
| ||| || ||||| || ||||| || || |||||||||
Sbjct 121787 GGATATTGTGGATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGAT 121832
Score = 113 bits (124), Expect = 8e-20
Identities = 606/965 (63%), Gaps = 75/965 (8%)
Strand=Plus/Plus
Query 212586 GTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCT 212645
||||| || || |||||||| ||||| || ||||| |||||||| | |||||| |
Sbjct 120176 GTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAC 120235
Query 212646 GTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGAC 212705
||||| | | || | ||| | || | || || | ||| || |||
Sbjct 120236 GTGAGCTGCGCCA-----------TAGTCGGCGACGAG----AGGTGGACGTTGAGCGAC 120280
Query 212706 TGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAG 212765
|| |||||| ||||| | | | | ||| ||||| | ||| |||| | |||| |||
Sbjct 120281 TGCGACTGGTCAATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAG 120340
Query 212766 AGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGC 212825
| |||||||||||||||| |||| ||||| || || |||| |||||| | ||||||
Sbjct 120341 ATCTCCCACACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGG 120400
Query 212826 ACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTG 212882
| || || |||| ||| || | | ||| | |||||||| ||||| | |
Sbjct 120401 ATGGAGCCGTTGTGCGCGATGATCGTGTTC---TTCATCGCGTCGTTCCACAGGCCGC-G 120456
Query 212883 GTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCT 212941
||| | ||| || || |||||||| | |||||| || || | ||| || |
Sbjct 120457 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 120516
Query 212942 CCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGC 213001
| ||| | ||| || ||||| ||||||| ||||||| || || |||||
Sbjct 120517 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 120576
Query 213002 AGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT 213061
|| || || ||||| || || | ||| ||| | | ||||||| ||||
Sbjct 120577 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGAT 120636
Query 213062 GAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCA 213121
| | ||| |||||||||| |||||||| | | | ||||||||
Sbjct 120637 CTTCTCCTTCAACTCGGCCCAGTCCC---------ACAGGTCCGTGGGCGTGACGTTCCA 120687
Query 213122 CATGTCAAACTGCAAGATGCCTTTGCTCACGGG---GCTGC------CCTGGTAAGAGGA 213172
|| ||| ||||||||| ||| | |||| |||| || || ||| ||| ||||
Sbjct 120688 CAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGG 120747
Query 213173 GTAG-----GG----GCCA---TGCTCCTTG------------GCCAGCTCGCAGGACGC 213208
|||| || |||| ||| | || |||| ||||| ||||
Sbjct 120748 GTAGTAGCCGGGCTCGCCAGGGTGCGCGATGGCGTAGTCGCGTGCCATGTCGCACGACGA 120807
Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268
|| | || |||| |||||| |||||||| |||| |||||| | ||||| ||
Sbjct 120808 CTCGATCGCGGCGTGGTAGATCGTTTCAAAGATCTGTACGTTGAGGTGGCGCGCCTCGGG 120867
Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328
|| ||| |||| | | ||| | || || || ||||| || ||||| ||
Sbjct 120868 CGAGTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACC 120927
Query 213329 GATGGGTCTGTGTCTCAGGTT--AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386
||| || | ||| | | ||| | || | || ||||| | |||||| ||||| |
Sbjct 120928 GATCGGGCGGTGGCGGAAGTTGCTGCGTTCG-GC-CTCCTTGACGGGGTAGTAGTTGACG 120985
Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446
|||||||| ||| |||||| ||| | || ||| ||| | | ||| | |
Sbjct 120986 TCGATGATGCGGTTCAGGTTGTACGTGACAACCTTGACGACGTCGTGCAGCTTC------ 121039
Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506
||||| |||| | |||| || | ||| ||| || ||||| || ||||||||
Sbjct 121040 TTGAAGTCGTACTCGCCGTTCTTGATGAACGAAGGGAGCGCGATCGACGCGAGGTTGCAG 121099
Query 213507 ACGGC 213511
|||||
Sbjct 121100 ACGGC 121104
>seq4
Length=1405664
Score = 123 bits (136), Expect = 5e-23
Identities = 134/176 (76%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237
|||||| ||| || ||||| | || | || ||||||||||| || | |||||| ||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295
||| ||||||||||||||||| || || || |||||| || | ||| |||| | | |
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||| || ||| |||||||||| |||||||| || |||||||||| ||||| ||
Sbjct 862514 GCGGTC--GTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTTCTGAATGCAGGG 862567
>seq15
Length=541629
Score = 86.0 bits (94), Expect = 1e-11
Identities = 119/163 (73%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|| ||||| | || | || |||||||||||||| | ||||| ||||| |||||||||
Sbjct 263190 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAGCCGGAGAAGAAG 263249
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCTG 48308
|||||||| || || ||||| || || || |||| ||||| ||| ||| |
Sbjct 263250 ATGCCCTCGACAGCAGCGAAAGCAACCAG--TCGTTCCGCAAAGACGGCGCGAGGGTCCG 263307
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
| ||||| ||||||||||| |||||||| |||||| ||
Sbjct 263308 AAATCCACCGCAGCGCCCAGTCGGCCTTCTTGGCGATGCAGGG 263350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532357521920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |