Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq23 205 2e-47
seq4 91.5 3e-13
>seq23
Length=148841
Score = 205 bits (226), Expect = 2e-47
Identities = 544/819 (66%), Gaps = 23/819 (3%)
Strand=Plus/Plus
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||||| ||||||||||||||||| ||||| ||| ||||| | ||| ||| | || |
Sbjct 121318 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACG 121377
Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937
|| |||||| | |||| ||| ||| || | |||| | |||||| ||| | |
Sbjct 121378 GCGTACCAGAGCT-TCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTT 121436
Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT-GG 221996
| || ||||| | |||| |||||||| |||||| || || || | ||| ||
Sbjct 121437 CTCGA---AGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGG-CGCCTCGG 121492
Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056
| || || | || ||||| ||| | | ||| | || |||||||||||| || |
Sbjct 121493 CAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAA 121552
Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116
|||||||||| || | || | | || ||||||| ||||| ||| || | |
Sbjct 121553 TCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 121612
Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176
| || | ||||| |||||||| |||||||||||||| || |||| ||| | ||||| |
Sbjct 121613 GGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAG 121672
Query 222177 GTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCG 222236
| ||||||||||| ||||| || || | | || |||| | | ||| || | |
Sbjct 121673 GGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGG 121732
Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296
| | | ||||| || ||||| ||||| ||||||| ||||| | ||
Sbjct 121733 GGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACG---AGCCGGTCGCGCGGA 121789
Query 222297 TACTG-GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353
|| || | | || | ||||| || || || || ||||| | || || ||||||
Sbjct 121790 TATTGTGGATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGA 121849
Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413
| ||||| ||||||||| || ||||| ||||| | | | || || || ||||| |
Sbjct 121850 GCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGA 121909
Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473
||| | | | | | |||||| || ||||| || ||||| |||||||| | |
Sbjct 121910 GCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCT 121969
Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533
||||| |||| ||||||||| | | | | | | |||| ||| ||||| || | |
Sbjct 121970 CCGACATGAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCG 122029
Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC-CCTTGGAGCTGGA----GAG 222588
|| | |||| ||||| ||| || | ||| || | ||||| | | || |||
Sbjct 122030 CGACGCGCATGAGCATGTGCTGCGGTCGCTC----GGCCACCTTGCCG-TCGAGGCGGAG 122084
Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627
|||||||| || || |||||||| || ||||||||
Sbjct 122085 TAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAGTT 122123
>seq4
Length=1405664
Score = 91.5 bits (100), Expect = 3e-13
Identities = 110/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| |||| ||| |||||| |||||| | | |||||| | | | || |||| ||
Sbjct 862567 CCCTGCATTCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCT-CGGAC-GACCGCTCCG 862510
Query 25870 TTT--GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927
| | |||||||| ||||| || ||||| || || ||||||||||| ||| ||| || |
Sbjct 862509 TCTTCGGCGAGCGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCAT 862450
Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAG 25953
| ||| ||||||||||||||||| ||
Sbjct 862449 TCGCGTCCATCTTCTGGCTCAAGAAG 862424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844358798720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |