Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11 250 3e-61 seq20 156 6e-33 seq6 138 1e-27 seq4 125 9e-24 seq18 109 7e-19 seq14 102 1e-16 seq10 91.5 2e-13 seq1 86.0 8e-12 >seq11 Length=953955 Score = 250 bits (276), Expect = 3e-61 Identities = 848/1310 (65%), Gaps = 21/1310 (2%) Strand=Plus/Minus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 736097 ACCGTCTTCGACGCCAAGCGCCTCATCGGCCGCAAGTTTGCCGACGCCGAGGTCCAGTCC 736038 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 736037 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 735983 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 735982 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 735923 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 735922 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACGGTCGCCAACGCCGTCG 735863 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 735862 TCACCGTTCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 735805 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || | || || ||| || | || ||||| || || || || || || || || || Sbjct 735804 GATCTCAGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 735745 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | ||||| || | || || || Sbjct 735744 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGAGG 735685 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| || || Sbjct 735684 CACGTTCGACGTCTCGCTCCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 735625 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || ||||| || || || || || || || |||||| | Sbjct 735624 CGGAGACACCCACCTCGGCGGTGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 735566 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 735565 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGT 735507 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | Sbjct 735506 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACCATC 735447 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || ||||| || || | || ||||| || || || Sbjct 735446 GAGATCGACTCGCTCTTCGAGGGCATCGACTTTTACACCTCGATCACCCGCGCCCGCTTC 735387 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 735386 GAGGAGCTTTGCCAGGACCTCTTCCGCTCGACGATGGAGCCCGTCGAGAAGGTCCTCCGC 735327 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 735326 GACTCGAAGATCGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 735267 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | |||| ||||||| || || ||||| || Sbjct 735266 ATCCCGCGTGTCCAGAAGCTCGTTTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 735207 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || ||||| ||||| ||||| || || ||| | || Sbjct 735206 ATCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTCACCGG- 735148 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| ||||| || || || || || || || | || Sbjct 735147 --CGACACGTCCGAGAAGACCCAGGATCTCCTCCTCCTCGACGTCGCGCCTCTCTCGACC 735090 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 735089 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 735030 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | | |||| || || || |||| || || || || || || || Sbjct 735029 ACCAAGAAGTCAGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 734970 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || || || ||||| |||| | ||||| ||| | || || || | || || | Sbjct 734969 GTCTACGAGGGTGAACGTGCCCGGACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 734910 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || |||||| | || |||||| || ||| Sbjct 734909 TCGGGCATCCCTCCCGCGCCCCGCGGCGTCCCCCAGATTGAGGTCACCTTCGACATCGAC 734850 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATC 196779 || || || || || |||||| | ||| ||||||| | | ||||| || Sbjct 734849 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTC 734800 >seq20 Length=382848 Score = 156 bits (172), Expect = 6e-33 Identities = 140/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 80775 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 80834 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || ||||| || || ||||| || || Sbjct 80835 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 80894 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || |||||| | ||||||||| | || |||||||| || || ||||| || || Sbjct 80895 GGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCT 80950 >seq6 Length=1276814 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||||||||| ||||| || Sbjct 942304 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 942245 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||||||| || ||||| |||||||| ||||| ||| Sbjct 942244 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 942185 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||| | || || || || || ||||| || || || || Sbjct 942184 CAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGTCG 942144 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 941531 ATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGAC 941472 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| || || || ||||| ||||| || | || || || || || ||||| || || Sbjct 941471 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 941412 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || || || || || |||||| | || ||||||||||| || || || || | ||| Sbjct 941411 GGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAGG 941352 Query 172078 CTTCGGGGTGG 172088 | || || || Sbjct 941351 TTGCGCGGAGG 941341 >seq4 Length=1405664 Score = 125 bits (138), Expect = 9e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||| ||||||||||||||||| ||||| ||||| || |||| |||||||| || || Sbjct 913762 ATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGAC 913821 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| || || || ||||| ||||| || | || || || || || ||||| || || Sbjct 913822 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 913881 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || || || ||| || |||||| | || || ||||| || || ||||| || || | Sbjct 913882 GGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 913941 Query 172078 CTTCGGGGTGGT 172089 || || || ||| Sbjct 913942 CTCCGCGGAGGT 913953 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || ||||||||||| || ||||| |||||||| ||||| ||||| || || || || || Sbjct 913487 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCG 913546 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || ||||| || || || ||||| || | ||||||||| | || || ||||| || Sbjct 913547 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 913606 Query 172060 CTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| || || | || || || ||| Sbjct 913607 CTCCACCTCGTGCTGCGTCTCCGCGGAGGT 913636 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171938 TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTG 171997 |||| ||||||||||| || ||||| ||||| || ||||| ||||| || | || || | Sbjct 914241 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCG 914300 Query 171998 CTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTA 172057 | || || |||||||| || ||||| || || ||||||||| | || || ||||| | Sbjct 914301 CCGGCAAGCAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGA 914360 Query 172058 CTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || | || || ||||| Sbjct 914361 CCCTCCACCTCGTGCTGCGTCTCCGCGGTGG 914391 >seq18 Length=451624 Score = 109 bits (120), Expect = 7e-19 Identities = 259/383 (68%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536 || ||||| ||| | |||| |||| | || || |||||||||||| | ||| | | Sbjct 187017 GCCAAGGAGGAGATTATGGAGTTTGTCAAGTTCCTCAAAAACCCCGAACACTACGAGCGC 187076 Query 198537 AGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACC 198596 || ||| ||||| || || ||| | ||| |||| | || || || || || || Sbjct 187077 CTCGGCGCCAAGATCCCTCGCGGCGCTATCCTCTCCGGCCCTCCCGGAACCGGCAAGACG 187136 Query 198597 CTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCGCGGC 198655 || || || || | ||| || ||| | | |||||||| || || || | || Sbjct 187137 CTCCTCGCCAAAGCGACCGCAGGAGAAGCCGGCGTCCCCTTCCTCTCCGTTTCCGGCTCG 187196 Query 198656 GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCA 198715 ||||| | ||||||||||||| ||||| ||||| | || ||||| || ||| || | | Sbjct 187197 GAGTT-CGTCGAGATGTTCGTCGGTGTCGGTGCCAGCCGTGTCCGCGACCTC-TTCACCC 187254 Query 198716 AGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGA 198774 || | ||| || || || ||||||||||| || ||||||||||| | || ||| Sbjct 187255 AGGCCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAGG 187314 Query 198775 AGCGTGG--TGGAACTAC--TACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAG 198830 ||||| || || | | | ||||| || ||||| ||| |||| | |||||| Sbjct 187315 CCCGTGGAAAGGGCGGACAGTTCGGC-GGTAACGACGAGCGCGAGTCGACGCTCAACCAG 187373 Query 198831 CTTCTCACTGAGATGGATGGTTT 198853 || ||| |||||||| || || Sbjct 187374 CTCCTCGTCGAGATGGACGGCTT 187396 >seq14 Length=625571 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| |||| ||| |||| |||||||| || || Sbjct 125396 ATCACCCTCGAGGTCGAGTCGTCGGACACGGTCGACAACGTCAAGGCCAAGATCCAGGAC 125455 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||||| ||||| || ||| | ||||| || || || || || || || ||||| || Sbjct 125456 AAGGAGGGCATCCCGCCCAACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGA 125511 >seq10 Length=1020928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||| |||||||| || || || ||||||||| | || |||| | | ||| || || Sbjct 346449 ATCACGCTCGAGGTCGACTCATCGGACACAATCTACGACGTCAAGGTCCAGACCCAGGAC 346390 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || ||||| | ||| || | || || || || || |||||||||||| Sbjct 346389 AAGGAGGGCATCCCGCCCGACCGGCAGCGCTTGATCTTCGCAGGGAAGCAGCTTGAAGAT 346330 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCT 172067 | || | |||| | ||| || | | || ||||| || || ||||| Sbjct 346329 CGTCGCGCGCTCGGCGCCTACGACATCAAGAACGAGTCGACGCTCCACCT 346280 >seq1 Length=1645103 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||| | || | || |||||| || || ||||| |||||||| |||| ||| Sbjct 441708 GACACGATCTACGACGTTAAGAGCAAGATCCAGGACAAGGATGGCATTCCGGCCGACCAG 441767 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || |||||||| ||||| | | | |||| | ||| | Sbjct 441768 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGATGGTCTTTCTCTCGGAGCATACCAT 441827 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || ||||| || || ||||||||||| Sbjct 441828 GTCCAGAAAGAGTCGACCCTTCACCTTGTTCT 441859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862087515360