Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23 241 1e-58 seq6 136 4e-27 seq4 118 1e-21 seq20 102 8e-17 seq14 98.7 1e-15 seq9 91.5 1e-13 seq1 82.4 7e-11 >seq23 Length=148841 Score = 241 bits (266), Expect = 1e-58 Identities = 521/764 (68%), Gaps = 19/764 (2%) Strand=Plus/Plus Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 |||||| ||||||||||| |||||| | || ||| || || ||||| | || | Sbjct 121315 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 121374 Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048 | | || ||| | ||| ||| |||| ||| ||| | ||||||||||| |||| Sbjct 121375 ACGG--CGTACCAGAGCTTCTGTGCGGGCACGGTGC-GCTTGGCGCGACCCTCCTTCTCG 121431 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || | ||| || |||| | || |||||| |||| ||| ||||| || | Sbjct 121432 TACTTCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCG 121491 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 ||||| | ||| | ||| |||||| | | || |||| ||| || || ||||| Sbjct 121492 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 121551 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | ||| ||||| | | | ||||||||| | || || ||| ||| ||| Sbjct 121552 ATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGG 121611 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 |||| ||| | ||| ||||| |||||||||||||| | ||| | |||| |||||| Sbjct 121612 AGGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCA 121671 Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||||||| || ||||||||||||| |||| || ||||||| |||| || | ||| Sbjct 121672 GGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATG 121731 Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402 || ||||| | | ||| |||||| || | ||| ||| |||| ||| || Sbjct 121732 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 121788 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCGC 149460 | ||||| | || ||||||||||| || || ||| |||||| ||| || ||| Sbjct 121789 ATATTGTGGATCGAGAGACCGATGCCGCCTGCAGT-CTTGGAGATGAGCGCACACGTC-T 121846 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 |||||| ||||||||||||||| |||| |||||| || | || |||||||| Sbjct 121847 TGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACG 121906 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 | | ||||| |||||||||| ||| | || || ||||| ||||| || Sbjct 121907 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACC 121966 Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640 || ||| | | ||||| ||||| ||||||| ||||| ||||| |||||||| | Sbjct 121967 GCTCCGACATGAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGA 122026 Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 122027 CCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 122070 Score = 167 bits (184), Expect = 2e-36 Identities = 369/551 (67%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 147949 GAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCG 148008 ||||||| || || ||||||||||||||||| ||| | ||| |||| ||||| || Sbjct 120174 GAGTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCG 120233 Query 148009 ACGACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGG 148064 ||| ||||| || | ||||| || | | || | |||||| |||| Sbjct 120234 ACG---TGAGC-TGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 120289 Query 148065 TCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAG 148124 |||||||||||||| ||||| ||||| | || |||| ||| | |||||||| Sbjct 120290 TCAATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCAC 120349 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCG 148184 | |||||||| | ||||||| | ||||| |||||| | | ||| | |||||| Sbjct 120350 ACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCCG 120409 Query 148185 CGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCA 148244 |||||| | ||| || ||| |||| | | ||| | | |||| ||||| Sbjct 120410 TTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCG 120469 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 || || | | || || ||||| |||||||||||||| ||||| || || | | Sbjct 120470 CGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATG 120529 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||| ||| |||| || |||| ||||||| ||| | ||||| ||||| || || Sbjct 120530 TTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTC 120589 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424 ||||| ||| | ||||||||||| | ||| | | || || ||||| Sbjct 120590 GGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAAC 120649 Query 148425 GCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 | ||||||||||| || || || || |||||||||| ||||||||||| | |||| Sbjct 120650 TCGGCCCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCG 120709 Query 148485 CGGCTAGCGGG 148495 |||| ||||| Sbjct 120710 TGGCTCGCGGG 120720 >seq6 Length=1276814 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||||||| | || | || |||||||||||||| ||||| ||||| Sbjct 942149 GTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTT 942208 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | || | |||||||| | ||| || |||| ||||| Sbjct 942209 GTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGAT 942268 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| |||||||| || || || |||||||||||||||| Sbjct 942269 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGG 942306 Score = 113 bits (124), Expect = 4e-20 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| | |||| ||| |||||||||||||||||| Sbjct 941371 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACC-GTCCTCGAGCTGCTTGCC 941429 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||||||||| || |||||||| |||||| ||| Sbjct 941430 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 941489 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | ||||| | | ||| || |||| ||||| Sbjct 941490 GACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGA 941530 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| || | | ||| |||||||||||||| |||||||| ||||| Sbjct 578069 GTCCTCGAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 578128 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGA 133617 ||| |||||| ||||| | | ||||| | || |||| || |||| Sbjct 578129 GTCCTGGATCTTGGTCTTGACGTCGTAGACCGTCTTGGACAGCTCAACCTCGA 578181 >seq4 Length=1405664 Score = 118 bits (130), Expect = 1e-21 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| |||| | |||| ||| ||||||||||||||||| Sbjct 913923 GGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACC-GTCCTCGAGCTGCTTGC 913865 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| | || | |||||||||||||||||||| || |||||||| |||||| || Sbjct 913864 CCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCT 913805 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| | || | ||||||| | ||| || |||| |||| Sbjct 913804 TGACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGA 913763 Score = 107 bits (118), Expect = 2e-18 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 913606 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 913549 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||||| | ||||| ||||||||||||||||| ||||| |||||||| Sbjct 913548 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 913502 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||||| | |||| |||||| ||||||||||| Sbjct 914362 GGTCGACTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTCCTCAAGCTGCTTGCC 914303 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 914302 GGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 914243 Query 133583 GAGCTG 133588 || ||| Sbjct 914242 GACCTG 914237 Score = 102 bits (112), Expect = 8e-17 Identities = 217/315 (69%), Gaps = 17/315 (5%) Strand=Plus/Plus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGT--TGCTCGCGTTAA 120439 || || |||||||||||||| || | | |||||| |||||||||| | || | | || Sbjct 861991 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAATCGAACGGGTTCTCCTTGTGGTAG 862050 Query 120440 AGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGC 120499 | | ||| | ||| | | || |||| ||||| || || ||||| ||||||| || Sbjct 862051 ATCTTCTCG--TTGCCGAGCGCAACCAGCAAGCGGTCGGCAACGAACTCGATGTACTGGC 862108 Query 120500 ACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558 |||| || ||| ||||||||| | | | || |||| |||| |||| |||||| Sbjct 862109 ACAT-GAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCC 862167 Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGGCATCTTGTGT 120618 | ||| || || ||||||| | ||| ||| | | |||| | ||| || | Sbjct 862168 TGCTCGATCTCGACCGCCT-CGCGAATGATGCGCTC-GACTGTGTCGGGG-----TGAGG 862220 Query 120619 TCGATGCGC---GTTCG-GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674 || || | || || | || ||||| |||||||| ||||| || ||||||||||| Sbjct 862221 GCGGCGCTCGAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCG 862280 Query 120675 CGATATCAGCTCGTT 120689 ||| || |||||||| Sbjct 862281 CGAGATGAGCTCGTT 862295 >seq20 Length=382848 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || |||||||| | ||| |||||||||||||||||| Sbjct 80936 GGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 80877 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 80876 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 80817 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 80816 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 80776 >seq14 Length=625571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 133507 CCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT 133566 |||||||||||||||||||| | || || |||||||||| ||| |||||||| ||||||| Sbjct 125513 CCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGGATGCCCTCCTTGT 125454 Query 133567 CGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | |||||| ||||| | || |||||||| | | ||| || |||| ||||| Sbjct 125453 CCTGGATCTTGGCCTTGACGTTGTCGACCGTGTCCGACGACTCGACCTCGAGGGTGA 125397 >seq9 Length=1185843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| ||| ||||||||||||||||| Sbjct 462280 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACC-GTCCTCGAGCTGCTTGC 462338 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | |||||||||||||| |||||||| |||||||| |||||| || Sbjct 462339 CGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 462398 Query 133582 TGAGCTG 133588 ||| ||| Sbjct 462399 TGACCTG 462405 >seq1 Length=1645103 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| |||| | |||||||||||||| |||||||| ||||| Sbjct 800098 GTCCTCGAGCTGCTTCCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 800039 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGA 133617 ||| |||| |||||| || | ||||||| | |||| || |||| Sbjct 800038 GTCCTGGATCGCGAGCTTGACGGTCTGGATGGTGTCGGAGAGCTCGACATCGA 799986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420570375120