Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq26 86.0 7e-12 seq25 86.0 7e-12 >seq26 Length=12709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | || || ||||| ||||||| |||||||||||||||||| || || | | Sbjct 11700 AGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAGCTGGAGG 11759 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 | || || ||| | | |||| ||| | || | ||||| || || || | ||| Sbjct 11760 ATGAATTCGTGCGGAATCGTGTCGGTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTAC 11819 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 ||| ||||||||||| || || ||||| | ||| | || | |||||||| |||| Sbjct 11820 GAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCAG 11879 Query 147088 GAGAG 147092 ||||| Sbjct 11880 GAGAG 11884 >seq25 Length=12709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | || || ||||| ||||||| |||||||||||||||||| || || | | Sbjct 11700 AGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAGCTGGAGG 11759 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 | || || ||| | | |||| ||| | || | ||||| || || || | ||| Sbjct 11760 ATGAATTCGTGCGGAATCGTGTCGGTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTAC 11819 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 ||| ||||||||||| || || ||||| | ||| | || | |||||||| |||| Sbjct 11820 GAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCAG 11879 Query 147088 GAGAG 147092 ||||| Sbjct 11880 GAGAG 11884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487722843200