Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq23 235 8e-56
seq4 163 4e-34
seq15 123 4e-22
seq10 102 1e-15
seq3 86.0 9e-11
>seq23
Length=148841
Score = 235 bits (260), Expect = 8e-56
Identities = 229/291 (79%), Gaps = 4/291 (1%)
Strand=Plus/Minus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||||| ||| || || || ||| |||| |||||||| || |||||||||||||
Sbjct 121977 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 121918
Query 259954 CCCGCAGAATTCGTCGTGCTTTCT-GTTGGAC-ATGAAGGCCGATTCGATCGAGGGCATC 260011
||||||| ||||||||||| || ||| || ||||||| ||| |||||||||||||||
Sbjct 121917 CCCGCAGCTCTCGTCGTGCTTCCTCGTT--ACGATGAAGGACGACTCGATCGAGGGCATC 121860
Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071
|| |||||||||||| ||| ||||||||||||||| | || |||||||||||| | |
Sbjct 121859 TACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGACTGCAGGCGGCATCGGTCTCTCG 121800
Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131
||||| | ||||| | ||| | ||| | || ||||| |||||| | || ||||||
Sbjct 121799 ATCCACAATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGAACGGC 121740
Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| | |||||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 121739 ATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 121689
Score = 132 bits (146), Expect = 7e-25
Identities = 341/508 (67%), Gaps = 16/508 (3%)
Strand=Plus/Minus
Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971
||||| ||| | ||||||||| | || |||| ||||| || || |||| |||
Sbjct 120630 CAGCACGGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGCCAG 120571
Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031
||||| ||| || ||||||||||||| |||| |||||||||||| ||||||||
Sbjct 120570 ATCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTC 120511
Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGG 263090
||| | ||||| || || ||||||| | || || ||| | | || | |||||
Sbjct 120510 CTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGG 120452
Query 263091 CCTGTGGA-CGCC-CGACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGG 263147
|||||||| || | ||| | || | |||| ||| |||| ||||| | |||
Sbjct 120451 CCTGTGGAACGACGCGA--TGAAGAACACGATCATCGCG-CACAACGGCTCCATCCAGAA 120395
Query 263148 CTTTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT 263207
| || || | | || ||| |||||| ||| |||||||||||||||| |
Sbjct 120394 CGTTCCCGGCA------TCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGAT 120341
Query 263208 GCCCAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCA 263267
| | ||| ||| || | || |||||||||| | | | |||||| ||
Sbjct 120340 CTCGCAGAAGGTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATTGACCAGTCGCA 120281
Query 263268 GTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAG-AGCATCACGTCGATGCACGCCT 263326
|||||||||| | ||||| | ||||| | | ||| |||||||||||||| |
Sbjct 120280 GTCGCTCAACGTCCACCTCTCGTCGCCGACTATGGCGCAGC-TCACGTCGATGCACTTTT 120222
Query 263327 ATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCA 263386
| | ||| || |||||||| |||||||| || || ||||| || |||| | |
Sbjct 120221 ACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTATTACCTCCGCACTCGCGCCGCCGTCG 120162
Query 263387 ACGCCATTCAATTCACCGTCGATCAGGC 263414
|||||| | ||||||||||| |||||
Sbjct 120161 GCGCCATCAAGTTCACCGTCGACCAGGC 120134
Score = 122 bits (134), Expect = 1e-21
Identities = 255/383 (67%), Gaps = 16/383 (4%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| ||||| || ||| |||||| || ||||||||||||||| |
Sbjct 121688 GGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 121629
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | || |||||| ||||||||||||| ||| |||| ||| |||||||
Sbjct 121628 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCCGTGCGCGCGA 121573
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965
| | ||| || ||||||| |||||| || || | || || || | | |
Sbjct 121572 CTTGTTCTTTGCG--CTGTGGATTCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 121517
Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025
|||||||| | ||||| ||||| ||||||||||||| || ||||| ||| || | |
Sbjct 121516 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTACGGTGACG 121457
Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTGC 262082
|| | | |||| ||| | ||| || |||||
Sbjct 121456 AGTTCAAGGAGCTCTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCAC---CGTGC 121400
Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142
|||||| || |||||| ||| | ||| |||||| ||||||| |||| |||| ||
Sbjct 121399 CCGCACAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 121340
Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165
|| ||||||||||||||| ||||
Sbjct 121339 TGCTCTACAAGGACGCCGCCAAC 121317
>seq4
Length=1405664
Score = 163 bits (180), Expect = 4e-34
Identities = 165/210 (79%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| |||||| |||||||||||| | ||||| ||| |||| ||||||| || |
Sbjct 862196 ATCATTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAG 862137
Query 1456583 CTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641
||||||||||||||| || || ||||||||||||||||| | | || || |||||||||
Sbjct 862136 CTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG-AGTTCGTTGCCGACCGC 862080
Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701
|||| | ||||||||| | |||||| ||||| | || ||||||||| | ||
Sbjct 862079 TTGCTGGTTGCGCTCGGCAAC-GAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTAT 862021
Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
|||| |||||||| | ||||||||||||||
Sbjct 862020 GGAGATGATCTCGATGGAGGGCAAGACCAA 861991
Score = 129 bits (142), Expect = 8e-24
Identities = 248/359 (69%), Gaps = 15/359 (4%)
Strand=Plus/Minus
Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190
||||||||| ||||||||||| || ||| || | | || |||||||||||||||
Sbjct 1343720 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAGTCCTCCTGGTT 1343661
Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247
|||| | || || || |||||| ||| || ||||| || |||| || || ||
Sbjct 1343660 GTAGCCCGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 1343602
Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304
| || || |||||| | | ||| | | || ||| ||||||||| | |||
Sbjct 1343601 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 1343544
Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361
|| | || |||||| ||| | |||| | | |||| | || | | | || |||
Sbjct 1343543 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 1343487
Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421
|||||||||||| | ||||||| |||| ||||| | ||||||||||| || || |||||
Sbjct 1343486 CTTGCCCATGGCAGACTGGTAGGTGTTTCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 1343427
Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480
|||||| |||||| || || || | ||||||| |||| |||||| ||| ||
Sbjct 1343426 GATGGAGGCGCAGATACCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 1343368
Score = 105 bits (116), Expect = 1e-16
Identities = 120/156 (77%), Gaps = 5/156 (3%)
Strand=Plus/Minus
Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181
||| |||||||| |||||| | | |||||| | || || || | || | ||||
Sbjct 862556 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 862499
Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239
|| || |||| |||||||| |||||||||||||| ||||| ||| ||| ||| ||||
Sbjct 862498 CGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTC-GCGTCCAT 862440
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||||||| | |||||||| ||
Sbjct 862439 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 862404
Score = 104 bits (114), Expect = 3e-16
Identities = 135/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926
||| || | |||| || ||||| || ||||| | | |||||||| | | |||| |
Sbjct 700796 CGCGCATACCGCAAAATCGCACACCGACTCTGAATCGGCTCGATGATCTTGTTCGACTGG 700855
Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986
||||| ||||| || ||||||||||| ||| | | ||||| || || |||||
Sbjct 700856 TTGCACGCCAGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGCAGGGCT 700915
Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046
||||| || ||| || | ||||||| |||||||||||||||| |||||| || |||
Sbjct 700916 TGTTGTGCGCCCGTGGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGCCGGCCG 700975
Query 333047 TGCGGCA 333053
| ||||
Sbjct 700976 AGGGGCA 700982
>seq15
Length=541629
Score = 123 bits (136), Expect = 4e-22
Identities = 157/212 (74%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579
|||||||||| ||| ||||||||||||||| |||| || | | || | |||| ||
Sbjct 263028 CAGATCATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCTGTC 262969
Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
| | |||||||||||||| ||| |||||| | |||||||| | | || ||||| || |
Sbjct 262968 GGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCGCGGATC 262911
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
| ||||| | |||||||| | ||||||| ||| | | ||||||||| |
Sbjct 262910 GACTGCTTGTCGCGCTCGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTC 262852
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
||||| |||||||| | ||||||||||||||
Sbjct 262851 ATGGAAATGATCTCGATGGAGGGCAAGACCAA 262820
>seq10
Length=1020928
Score = 102 bits (112), Expect = 1e-15
Identities = 192/281 (68%), Gaps = 1/281 (0%)
Strand=Plus/Plus
Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556
|| |||| |||||||||||||||||||| | | | || | || || | |||
Sbjct 271131 CCCATGACCGGCTTGTTGGCCTGCGGCGAGATGATGTTTCGCGCGACAGCGGCGATGTTG 271190
Query 1817557 GTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615
||| ||| | || | ||| | ||||| || || || | ||||||||||||||||||
Sbjct 271191 ATCAGCTCCGACCGAGTCTCTTCCGACTGCGGAACGTGCAAGTTCATCTCGTCGCCGTCG 271250
Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675
|||||||| ||||||| |||||| | ||||||| ||| | ||| | ||||||
Sbjct 271251 AAGTCGGCGTTGTAGGGCGACGTGACAGAGAGGTTGAGCCGGAAGGTCGAGTACGGCATG 271310
Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735
|| || ||| | ||| || | |||| | || ||||||||||| | ||
Sbjct 271311 AGCTTGACGCGATGCGCCATCATCGACATCTTGTGCAAAGACGGCTGCCGGTTGAACAAG 271370
Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776
||| ||||||| | ||||| |||||||| |||| ||
Sbjct 271371 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACGATCCAGCC 271411
Score = 91.5 bits (100), Expect = 2e-12
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1818078 GGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCG 1818137
|||||||||||||| || | || | |||| ||||| || |||||||| ||||||
Sbjct 271548 GGCGTCACGCGCTCAGGGTACGTCAACGTCCGTGCGATCGAGTACGGCACGCCGACCTCG 271607
Query 1818138 TCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTG 1818197
|| | | | | | |||||| ||||||||| || || | |||| ||| ||||||
Sbjct 271608 TCGAGGGCGAGGTTCGGGTCGCCCGTGATGACGGTACGAGCCGAGAAGTCGACACGCTTG 271667
Query 1818198 CCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237
||||| |||||||| | | ||||||||||||||||
Sbjct 271668 CCCATCAGGTTGCCGCGCAGACGACCCTCCTTGCCCTTGA 271707
>seq3
Length=1454952
Score = 86.0 bits (94), Expect = 9e-11
Identities = 84/107 (79%), Gaps = 6/107 (6%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| |||||||||||||||||| || || |||| || |||||| |
Sbjct 556921 ATCTACAAGGTCCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGAACAAGGCG 556868
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
||| ||| | |||||||||||||||||||| |||| ||| ||||
Sbjct 556867 ATGCTCATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGCGTCGG 556821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177807534830156
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