Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 235 8e-56 seq4 163 4e-34 seq15 123 4e-22 seq10 102 1e-15 seq3 86.0 9e-11 >seq23 Length=148841 Score = 235 bits (260), Expect = 8e-56 Identities = 229/291 (79%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| || || || ||| |||| |||||||| || ||||||||||||| Sbjct 121977 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 121918 Query 259954 CCCGCAGAATTCGTCGTGCTTTCT-GTTGGAC-ATGAAGGCCGATTCGATCGAGGGCATC 260011 ||||||| ||||||||||| || ||| || ||||||| ||| ||||||||||||||| Sbjct 121917 CCCGCAGCTCTCGTCGTGCTTCCTCGTT--ACGATGAAGGACGACTCGATCGAGGGCATC 121860 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 || |||||||||||| ||| ||||||||||||||| | || |||||||||||| | | Sbjct 121859 TACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGACTGCAGGCGGCATCGGTCTCTCG 121800 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 ||||| | ||||| | ||| | ||| | || ||||| |||||| | || |||||| Sbjct 121799 ATCCACAATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGAACGGC 121740 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | |||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct 121739 ATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 121689 Score = 132 bits (146), Expect = 7e-25 Identities = 341/508 (67%), Gaps = 16/508 (3%) Strand=Plus/Minus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| | ||||||||| | || |||| ||||| || || |||| ||| Sbjct 120630 CAGCACGGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGCCAG 120571 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 ||||| ||| || ||||||||||||| |||| |||||||||||| |||||||| Sbjct 120570 ATCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTC 120511 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGG 263090 ||| | ||||| || || ||||||| | || || ||| | | || | ||||| Sbjct 120510 CTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGG 120452 Query 263091 CCTGTGGA-CGCC-CGACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGG 263147 |||||||| || | ||| | || | |||| ||| |||| ||||| | ||| Sbjct 120451 CCTGTGGAACGACGCGA--TGAAGAACACGATCATCGCG-CACAACGGCTCCATCCAGAA 120395 Query 263148 CTTTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT 263207 | || || | | || ||| |||||| ||| |||||||||||||||| | Sbjct 120394 CGTTCCCGGCA------TCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGAT 120341 Query 263208 GCCCAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCA 263267 | | ||| ||| || | || |||||||||| | | | |||||| || Sbjct 120340 CTCGCAGAAGGTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATTGACCAGTCGCA 120281 Query 263268 GTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAG-AGCATCACGTCGATGCACGCCT 263326 |||||||||| | ||||| | ||||| | | ||| |||||||||||||| | Sbjct 120280 GTCGCTCAACGTCCACCTCTCGTCGCCGACTATGGCGCAGC-TCACGTCGATGCACTTTT 120222 Query 263327 ATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCA 263386 | | ||| || |||||||| |||||||| || || ||||| || |||| | | Sbjct 120221 ACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTATTACCTCCGCACTCGCGCCGCCGTCG 120162 Query 263387 ACGCCATTCAATTCACCGTCGATCAGGC 263414 |||||| | ||||||||||| ||||| Sbjct 120161 GCGCCATCAAGTTCACCGTCGACCAGGC 120134 Score = 122 bits (134), Expect = 1e-21 Identities = 255/383 (67%), Gaps = 16/383 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| ||||| || ||| |||||| || ||||||||||||||| | Sbjct 121688 GGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 121629 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||||| ||| |||| ||| ||||||| Sbjct 121628 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCCGTGCGCGCGA 121573 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 | | ||| || ||||||| |||||| || || | || || || | | | Sbjct 121572 CTTGTTCTTTGCG--CTGTGGATTCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 121517 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||||||| | ||||| ||||| ||||||||||||| || ||||| ||| || | | Sbjct 121516 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTACGGTGACG 121457 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTGC 262082 || | | |||| ||| | ||| || ||||| Sbjct 121456 AGTTCAAGGAGCTCTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCAC---CGTGC 121400 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 |||||| || |||||| ||| | ||| |||||| ||||||| |||| |||| || Sbjct 121399 CCGCACAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 121340 Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165 || ||||||||||||||| |||| Sbjct 121339 TGCTCTACAAGGACGCCGCCAAC 121317 >seq4 Length=1405664 Score = 163 bits (180), Expect = 4e-34 Identities = 165/210 (79%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| |||||| |||||||||||| | ||||| ||| |||| ||||||| || | Sbjct 862196 ATCATTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAG 862137 Query 1456583 CTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 ||||||||||||||| || || ||||||||||||||||| | | || || ||||||||| Sbjct 862136 CTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG-AGTTCGTTGCCGACCGC 862080 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 |||| | ||||||||| | |||||| ||||| | || ||||||||| | || Sbjct 862079 TTGCTGGTTGCGCTCGGCAAC-GAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTAT 862021 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 |||| |||||||| | |||||||||||||| Sbjct 862020 GGAGATGATCTCGATGGAGGGCAAGACCAA 861991 Score = 129 bits (142), Expect = 8e-24 Identities = 248/359 (69%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190 ||||||||| ||||||||||| || ||| || | | || ||||||||||||||| Sbjct 1343720 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAGTCCTCCTGGTT 1343661 Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247 |||| | || || || |||||| ||| || ||||| || |||| || || || Sbjct 1343660 GTAGCCCGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 1343602 Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304 | || || |||||| | | ||| | | || ||| ||||||||| | ||| Sbjct 1343601 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 1343544 Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361 || | || |||||| ||| | |||| | | |||| | || | | | || ||| Sbjct 1343543 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 1343487 Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421 |||||||||||| | ||||||| |||| ||||| | ||||||||||| || || ||||| Sbjct 1343486 CTTGCCCATGGCAGACTGGTAGGTGTTTCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 1343427 Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480 |||||| |||||| || || || | ||||||| |||| |||||| ||| || Sbjct 1343426 GATGGAGGCGCAGATACCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 1343368 Score = 105 bits (116), Expect = 1e-16 Identities = 120/156 (77%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| |||||||| |||||| | | |||||| | || || || | || | |||| Sbjct 862556 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 862499 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || || |||| |||||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct 862498 CGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTC-GCGTCCAT 862440 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||| | |||||||| || Sbjct 862439 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 862404 Score = 104 bits (114), Expect = 3e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926 ||| || | |||| || ||||| || ||||| | | |||||||| | | |||| | Sbjct 700796 CGCGCATACCGCAAAATCGCACACCGACTCTGAATCGGCTCGATGATCTTGTTCGACTGG 700855 Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 ||||| ||||| || ||||||||||| ||| | | ||||| || || ||||| Sbjct 700856 TTGCACGCCAGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGCAGGGCT 700915 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 ||||| || ||| || | ||||||| |||||||||||||||| |||||| || ||| Sbjct 700916 TGTTGTGCGCCCGTGGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGCCGGCCG 700975 Query 333047 TGCGGCA 333053 | |||| Sbjct 700976 AGGGGCA 700982 >seq15 Length=541629 Score = 123 bits (136), Expect = 4e-22 Identities = 157/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 |||||||||| ||| ||||||||||||||| |||| || | | || | |||| || Sbjct 263028 CAGATCATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCTGTC 262969 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 | | |||||||||||||| ||| |||||| | |||||||| | | || ||||| || | Sbjct 262968 GGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCGCGGATC 262911 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | ||||| | |||||||| | ||||||| ||| | | ||||||||| | Sbjct 262910 GACTGCTTGTCGCGCTCGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTC 262852 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 ||||| |||||||| | |||||||||||||| Sbjct 262851 ATGGAAATGATCTCGATGGAGGGCAAGACCAA 262820 >seq10 Length=1020928 Score = 102 bits (112), Expect = 1e-15 Identities = 192/281 (68%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| |||||||||||||||||||| | | | || | || || | ||| Sbjct 271131 CCCATGACCGGCTTGTTGGCCTGCGGCGAGATGATGTTTCGCGCGACAGCGGCGATGTTG 271190 Query 1817557 GTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| ||| | || | ||| | ||||| || || || | |||||||||||||||||| Sbjct 271191 ATCAGCTCCGACCGAGTCTCTTCCGACTGCGGAACGTGCAAGTTCATCTCGTCGCCGTCG 271250 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 |||||||| ||||||| |||||| | ||||||| ||| | ||| | |||||| Sbjct 271251 AAGTCGGCGTTGTAGGGCGACGTGACAGAGAGGTTGAGCCGGAAGGTCGAGTACGGCATG 271310 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || ||| | ||| || | |||| | || ||||||||||| | || Sbjct 271311 AGCTTGACGCGATGCGCCATCATCGACATCTTGTGCAAAGACGGCTGCCGGTTGAACAAG 271370 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||| ||||||| | ||||| |||||||| |||| || Sbjct 271371 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACGATCCAGCC 271411 Score = 91.5 bits (100), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1818078 GGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCG 1818137 |||||||||||||| || | || | |||| ||||| || |||||||| |||||| Sbjct 271548 GGCGTCACGCGCTCAGGGTACGTCAACGTCCGTGCGATCGAGTACGGCACGCCGACCTCG 271607 Query 1818138 TCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTG 1818197 || | | | | | |||||| ||||||||| || || | |||| ||| |||||| Sbjct 271608 TCGAGGGCGAGGTTCGGGTCGCCCGTGATGACGGTACGAGCCGAGAAGTCGACACGCTTG 271667 Query 1818198 CCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237 ||||| |||||||| | | |||||||||||||||| Sbjct 271668 CCCATCAGGTTGCCGCGCAGACGACCCTCCTTGCCCTTGA 271707 >seq3 Length=1454952 Score = 86.0 bits (94), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||||||||||||| || || |||| || |||||| | Sbjct 556921 ATCTACAAGGTCCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGAACAAGGCG 556868 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| ||| | |||||||||||||||||||| |||| ||| |||| Sbjct 556867 ATGCTCATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGCGTCGG 556821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807534830156