Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq20 89.7 5e-13 seq4 86.0 6e-12 >seq6 Length=1276814 Score = 122 bits (134), Expect = 8e-23 Identities = 149/198 (75%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 |||||| || || ||||||||||||| ||| | |||| |||||| || |||||||| || Sbjct 941337 ATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 941396 Query 35566 GGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 || ||| || || |||| || |||||||| ||||| || ||||| ||||||||||| | Sbjct 941397 -GCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 941455 Query 35625 AAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGAT 35683 ||| | | |||||||||| |||||| ||| | |||| | | ||||| ||| Sbjct 941456 GAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGAC 941514 Query 35684 TCCACCTCCACCGTGATC 35701 || ||||| | |||||| Sbjct 941515 TCGACCTCGAGGGTGATC 941532 >seq20 Length=382848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| || ||||| Sbjct 80930 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 80871 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 80870 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 80812 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || | | |||||| ||| || ||||| | |||||| Sbjct 80811 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774 >seq4 Length=1405664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| ||| | || || |||| || |||||||| ||||| || Sbjct 913917 CTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 913858 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | | |||||||||| |||||| ||| | | | Sbjct 913857 GATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 913798 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 | | |||||| ||| || ||||| | |||||| Sbjct 913797 GTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 ||| || || |||||||||||| | ||| || || |||| || |||||||| || || | Sbjct 914356 CTCTTTCTGGATGTTGTAATCG-CTAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGA 914298 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 | ||||| ||||||||||| | ||| | || |||||||||| ||||| Sbjct 914297 AGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 914249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793385873040