Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 8e-23
seq20 89.7 5e-13
seq4 86.0 6e-12
>seq6
Length=1276814
Score = 122 bits (134), Expect = 8e-23
Identities = 149/198 (75%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565
|||||| || || ||||||||||||| ||| | |||| |||||| || |||||||| ||
Sbjct 941337 ATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 941396
Query 35566 GGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624
|| ||| || || |||| || |||||||| ||||| || ||||| ||||||||||| |
Sbjct 941397 -GCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 941455
Query 35625 AAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGAT 35683
||| | | |||||||||| |||||| ||| | |||| | | ||||| |||
Sbjct 941456 GAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGAC 941514
Query 35684 TCCACCTCCACCGTGATC 35701
|| ||||| | ||||||
Sbjct 941515 TCGACCTCGAGGGTGATC 941532
>seq20
Length=382848
Score = 89.7 bits (98), Expect = 5e-13
Identities = 116/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| | | ||| || |||| || |||||||| || |||||
Sbjct 80930 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 80871
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 80870 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 80812
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| | | |||||| ||| || ||||| | ||||||
Sbjct 80811 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774
>seq4
Length=1405664
Score = 86.0 bits (94), Expect = 6e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| ||| | || || |||| || |||||||| ||||| ||
Sbjct 913917 CTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 913858
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||| | | |||||||||| |||||| ||| | | |
Sbjct 913857 GATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 913798
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
| | |||||| ||| || ||||| | ||||||
Sbjct 913797 GTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761
Score = 82.4 bits (90), Expect = 7e-11
Identities = 85/109 (78%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603
||| || || |||||||||||| | ||| || || |||| || |||||||| || || |
Sbjct 914356 CTCTTTCTGGATGTTGTAATCG-CTAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGA 914298
Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
| ||||| ||||||||||| | ||| | || |||||||||| |||||
Sbjct 914297 AGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 914249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793385873040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |