Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 129 6e-25 seq23 122 9e-23 seq6 122 9e-23 seq9 98.7 1e-15 >seq4 Length=1405664 Score = 129 bits (142), Expect = 6e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| |||| ||||||||| || || || || || || ||||||||||||| Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||||||||| || || Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACC 913773 Query 134667 TCGAGAGTAAT 134677 |||||||| || Sbjct 913772 TCGAGAGTGAT 913762 >seq23 Length=148841 Score = 122 bits (134), Expect = 9e-23 Identities = 290/430 (67%), Gaps = 9/430 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| ||||||| ||||| ||||| |||||||| ||||||||| |||| | Sbjct 122051 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCCATC 121992 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| | | ||||||||||| ||||| || | || | Sbjct 121991 GAGACGTACAATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 121932 Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| ||| || || | || ||||| || | | || ||| || ||| Sbjct 121931 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGACTC 121873 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800 ||||| ||||| ||| ||||||| | || || || || ||| || || || ||| Sbjct 121872 GATCGAGGGCATCTACGACACGCT-CAAGACGTGTGCGCTCATCTCC-AAGACTGCAGGC 121815 Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860 || || ||||| | || | | ||||| | ||| ||||| ||| ||| Sbjct 121814 GGCATCGGTCTCTCGATCCACAATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 121755 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | || Sbjct 121754 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 121695 Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 |||||||| || |||||| ||||| |||||||| | |||||||||||||| Sbjct 121694 GACCAGGGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 121635 Query 7978 GACATTTACG 7987 ||||||| || Sbjct 121634 GACATTTTCG 121625 >seq6 Length=1276814 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 || |||||||| | | | |||||| || || ||||| || ||||| || ||||||||| Sbjct 941335 GCATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAG 941394 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| || ||| || ||| |||||||| ||||| || || ||||| |||||||| ||| Sbjct 941395 TCGCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCG 941454 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || || || || || || || || ||||| ||| | ||||| ||||| Sbjct 941455 GGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGAC 941514 Query 134661 TCCACGTCGAGAGTAAT 134677 || || ||||| || || Sbjct 941515 TCGACCTCGAGGGTGAT 941531 >seq9 Length=1185843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | |||||||| || || || ||||| || ||||||||| Sbjct 462245 GCCATACCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 462304 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 || || ||| || ||| |||||||| ||||| || || ||||| |||||||| ||| Sbjct 462305 TCCGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCG 462364 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || || || || || || Sbjct 462365 GGGGGGATGCCCTCCTTGTCCTGGATCTT 462393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398159935760