Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 6e-25
seq23 122 9e-23
seq6 122 9e-23
seq9 98.7 1e-15
>seq4
Length=1405664
Score = 129 bits (142), Expect = 6e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| |||| ||||||||| || || || || || || |||||||||||||
Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| |||||||| ||||| || || ||||| |||||||| ||||| ||
Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | ||||||||||| || ||
Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACC 913773
Query 134667 TCGAGAGTAAT 134677
|||||||| ||
Sbjct 913772 TCGAGAGTGAT 913762
>seq23
Length=148841
Score = 122 bits (134), Expect = 9e-23
Identities = 290/430 (67%), Gaps = 9/430 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||||| ||||||| ||||| ||||| |||||||| ||||||||| |||| |
Sbjct 122051 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCCATC 121992
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| |||||| | | ||||| | | ||||||||||| ||||| || | || |
Sbjct 121991 GAGACGTACAATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 121932
Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742
|| ||||| ||| || || | || ||||| || | | || ||| || |||
Sbjct 121931 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGACTC 121873
Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800
||||| ||||| ||| ||||||| | || || || || ||| || || || |||
Sbjct 121872 GATCGAGGGCATCTACGACACGCT-CAAGACGTGTGCGCTCATCTCC-AAGACTGCAGGC 121815
Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860
|| || ||||| | || | | ||||| | ||| ||||| ||| |||
Sbjct 121814 GGCATCGGTCTCTCGATCCACAATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 121755
Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920
|| | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | ||
Sbjct 121754 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 121695
Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977
|||||||| || |||||| ||||| |||||||| | ||||||||||||||
Sbjct 121694 GACCAGGGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 121635
Query 7978 GACATTTACG 7987
||||||| ||
Sbjct 121634 GACATTTTCG 121625
>seq6
Length=1276814
Score = 122 bits (134), Expect = 9e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540
|| |||||||| | | | |||||| || || ||||| || ||||| || |||||||||
Sbjct 941335 GCATTTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAG 941394
Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
|||| || ||| || ||| |||||||| ||||| || || ||||| |||||||| |||
Sbjct 941395 TCGCTAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCG 941454
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660
|| || || || || || || || || || ||||| ||| | ||||| |||||
Sbjct 941455 GGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGAC 941514
Query 134661 TCCACGTCGAGAGTAAT 134677
|| || ||||| || ||
Sbjct 941515 TCGACCTCGAGGGTGAT 941531
>seq9
Length=1185843
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540
||| | || || | ||| || | |||||||| || || || ||||| || |||||||||
Sbjct 462245 GCCATACCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 462304
Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
|| || ||| || ||| |||||||| ||||| || || ||||| |||||||| |||
Sbjct 462305 TCCGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCG 462364
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || ||||| || || || || || ||
Sbjct 462365 GGGGGGATGCCCTCCTTGTCCTGGATCTT 462393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398159935760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |