Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq23 181 1e-40
seq17 87.8 2e-12
>seq23
Length=148841
Score = 181 bits (200), Expect = 1e-40
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Plus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
|| |||||||| |||||| | || | |||||||| |||| || ||| | || | |
Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || ||||| ||| ||||| || ||||| | ||||||||| | |
Sbjct 121384 CAGAGCTTCTGT-GCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
||| | | ||||| ||||| | |||| ||| || || |||| | ||||||||
Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| || ||||| |||||
Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || || | || || | || || || || | || | ||
Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185
|| | || || ||||||||||| || ||||| | |||| || | | | ||
Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGA---ACGCGCCAGGGCGCTT 121679
Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242
|| |||||| || || | ||| ||| ||| | || || ||||| || |||||
Sbjct 121680 GTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGAT 121739
Query 119243 ACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300
|| | || | ||| || || || ||| |||||| | | || | || || ||||
Sbjct 121740 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGG 121797
Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360
|| | ||| || || ||||| ||| ||||| |||| ||| | |||| || ||
Sbjct 121798 ATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCG 121857
Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420
||||| || ||||||||||| |||| | | | ||||||||| ||| | || ||
Sbjct 121858 TAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGG 121917
Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACAT 119479
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 121918 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACAT 121976
Query 119480 CTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539
| ||| ||||| | | || | |||||| || ||||| || |||| || ||| ||
Sbjct 121977 GAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCG 122036
Query 119540 CATAAACATGTATTGGGGT 119558
||| | ||||| || |||
Sbjct 122037 CATGAGCATGTGCTGCGGT 122055
>seq17
Length=487578
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| ||||| || | ||||||||||| || ||||| || || | |||||||
Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | ||||| | ||| ||||||| || ||||| ||| ||
Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | ||||| || |||
Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434906243280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |