Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq23 181 1e-40 seq17 87.8 2e-12 >seq23 Length=148841 Score = 181 bits (200), Expect = 1e-40 Identities = 489/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Plus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | || ||||| ||| ||||| || ||||| | ||||||||| | | Sbjct 121384 CAGAGCTTCTGT-GCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| | | ||||| ||||| | |||| ||| || || |||| | |||||||| Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || || ||| || |||| |||||||||||| || ||||| ||||| Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | || || || | || || | || || || || | || | || Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185 || | || || ||||||||||| || ||||| | |||| || | | | || Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGA---ACGCGCCAGGGCGCTT 121679 Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 || |||||| || || | ||| ||| ||| | || || ||||| || ||||| Sbjct 121680 GTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGAT 121739 Query 119243 ACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300 || | || | ||| || || || ||| |||||| | | || | || || |||| Sbjct 121740 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATATTGTGG 121797 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || | ||| || || ||||| ||| ||||| |||| ||| | |||| || || Sbjct 121798 ATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCG 121857 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 ||||| || ||||||||||| |||| | | | ||||||||| ||| | || || Sbjct 121858 TAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGG 121917 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACAT 119479 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 121918 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACAT 121976 Query 119480 CTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 | ||| ||||| | | || | |||||| || ||||| || |||| || ||| || Sbjct 121977 GAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCG 122036 Query 119540 CATAAACATGTATTGGGGT 119558 ||| | ||||| || ||| Sbjct 122037 CATGAGCATGTGCTGCGGT 122055 >seq17 Length=487578 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 || |||||| ||||| || | ||||||||||| || ||||| || || | ||||||| Sbjct 147391 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 147450 Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191 | | | || || || || || | ||||| | ||| ||||||| || ||||| ||| || Sbjct 147451 CGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCACCCC 147510 Query 12192 GTCAGGGAGTTCGTTGAG 12209 ||| | ||||| || ||| Sbjct 147511 GTCCGCGAGTTTGTCGAG 147528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434906243280