Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 432 4e-116 >seq23 Length=148841 Score = 432 bits (478), Expect = 4e-116 Identities = 537/733 (73%), Gaps = 2/733 (0%) Strand=Plus/Plus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || ||| ||| ||| Sbjct 121323 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 121382 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | | || | || |||| ||||||| ||||| || | | Sbjct 121383 CCAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 | ||| ||||| | || || ||||| ||| | || || || |||| ||||| | Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| || |||||||| || Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| ||| | |||||| | ||| |||||| || || ||||| || Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | |||||||||||||||||||| || ||||||||||||| || ||||||| Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTT 121682 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||| ||||||| |||||| || |||||||||||| | || ||||||||||| | |||||| Sbjct 121683 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 121742 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | ||| |||| || || || | | | | Sbjct 121743 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATT-GTGGATCG 121801 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| || | |||||||||| |||| ||| ||||||||| ||||||| Sbjct 121802 AGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAGA 121861 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | || |||||||| ||| | ||| |||| Sbjct 121862 TGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCG 121921 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| ||||||||| ||| || | ||| |||| Sbjct 121922 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGAT 121981 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||||||| || |||| | ||||||||||||||||||||||||||||||||||| Sbjct 121982 TGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 122041 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 122042 GCATGTGCTGCGG 122054 Score = 365 bits (404), Expect = 5e-96 Identities = 531/744 (71%), Gaps = 12/744 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||||||||||||||| ||||||||| | || | | Sbjct 122054 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCC 121995 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| | || ||| || || ||| ||||||||| ||||||| || ||| Sbjct 121994 ATCGAGACGTACAATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTC 121935 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||||| | ||| || ||||| || | |||||||| ||| Sbjct 121934 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGAC 121875 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| ||||||||| ||| |||| |||||||||| | || Sbjct 121874 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGACTGCAGGC 121815 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | |||||||| ||| || | ||| || ||||| Sbjct 121814 GGCATCGGTCTCTCGATCCAC-AATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 121756 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||| |||| ||||||||||| | |||||||||||| | |||| Sbjct 121755 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACG 121697 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| ||| ||| |||||||||||||||||||||| ||||||| Sbjct 121696 TCGACCAGGGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 121637 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| | | || |||||||| || ||| |||||| || | |||||| | || | Sbjct 121636 CCGACATTTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCGC 121577 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 ||||| | ||| || |||||||||| ||||| ||||||||| || ||| || ||| Sbjct 121576 GCGACTTGTTCTTTGCGCTGTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 121517 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| ||| || || || | ||| |||||||| || | Sbjct 121516 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTACGGTGACG 121457 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 |||||| ||| | | | || |||| |||| || ||| | | ||| | Sbjct 121456 AGTTCAAGGAGCTCTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAA----GCGCACCGTG 121401 Query 19761 CCCG----GGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 |||| | | ||||| || ||||||| | |||||||||||| |||| || | | Sbjct 121400 CCCGCACAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTC 121341 Query 19817 ATGTGCTACAAGGACGCCGCGAAC 19840 ||| ||||||||||||||| ||| Sbjct 121340 ATGCTCTACAAGGACGCCGCCAAC 121317 Score = 215 bits (238), Expect = 6e-51 Identities = 568/858 (66%), Gaps = 58/858 (7%) Strand=Plus/Plus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || || | || ||||||||||||||||||||||||||||| ||||| | ||| Sbjct 120169 GGCGCGAGTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTG 120228 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302 ||| || |||| |||| | |||| | | | || |||||||||||| ||||| Sbjct 120229 CATCGACGTGAGCTGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTG 120288 Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 ||| ||| |||| ||||||||||| || | ||||||||| ||| |||| |||||||| Sbjct 120289 GTCAATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCA 120348 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC--CAGCGCT-TGTACGCTCCC 78419 | |||| ||| ||| ||| ||||| || ||||| | | || | || | | || Sbjct 120349 CACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCC 120408 Query 78420 ACCG-GCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGAT 78478 | || || | || ||||| || |||||| | | | || | Sbjct 120409 GTTGTGCGCG-ATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGT 120467 Query 78479 CCCGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGT 78535 | ||| ||| ||| |||| | | |||||||||||| ||| ||||| || Sbjct 120468 CGCGG---AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGT 120524 Query 78536 AGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGG 78595 ||||||||| ||||||||||||||| ||||||||| || | ||||||| |||||| | Sbjct 120525 AGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACG 120584 Query 78596 CGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCT 78655 |||||||||| || ||| | || || || || | || ||| | ||||| ||| Sbjct 120585 CGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCT 120644 Query 78656 T----TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGA 78709 | | |||| |||||| | || | | || || ||||| ||| || | || Sbjct 120645 TCAACTCGGCCCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGA 120704 Query 78710 TACCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCC---CTC-- 78755 || | | ||| ||||| | ||||| ||| ||| | || ||| Sbjct 120705 GGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGC 120764 Query 78756 -------CTCCTTGGCG-AGT-----------TCGC---ATGACTCGAGCAGGGCCGCGT 78793 | | ||||| ||| |||| | ||||||| | || |||| Sbjct 120765 CAGGGTGCGCGATGGCGTAGTCGCGTGCCATGTCGCACGACGACTCGATC---GCGGCGT 120821 Query 78794 GGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAA 78853 |||| | | || ||||| |||||| | |||||||| || | |||||||| | Sbjct 120822 GGTAGATCGTTTCAAAGATCTGTACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCA 120881 Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913 ||| ||| ||||||| | ||||| || ||||| || |||||| ||||||| ||||||| Sbjct 120882 GGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGC 120941 Query 78914 GCATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTC 78972 | | |||||| | ||| |||| ||| | ||||| |||| ||||||| ||||||| Sbjct 120942 GGAAGTTGCTGCGTTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTC 121000 Query 78973 AGGTTACGCGTGACGACC 78990 ||||| |||||| ||| Sbjct 121001 AGGTTGTACGTGACAACC 121018 Score = 199 bits (220), Expect = 4e-46 Identities = 564/856 (66%), Gaps = 54/856 (6%) Strand=Plus/Minus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 ||| |||||| || ||||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 121018 GGTTGTCACGTACAACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 120959 Query 20074 GCGCAAGTCG-AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACG 20132 || | | | || | |||||||| ||||||| ||||| || ||||| || ||||||| Sbjct 120958 -CGAACGCAGCAACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGACG 120900 Query 20133 TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCA 20192 |||||| ||| |||| | |||||| ||| |||||||| | |||||| | Sbjct 120899 CCTTCATGGCCCTCCGCCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTACAGA 120840 Query 20193 TCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA-----------ACT-CG 20240 |||| || | | |||||||| || || | |||||||| ||| || Sbjct 120839 TCTTTGAAACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCACGCGACTACG 120780 Query 20241 CCAAAGAGGACG-------GCCCG-----TACGAGACGTTCAAGGGG---------TCGC 20279 ||| | | || ||||| ||| ||| ||||| | |||| Sbjct 120779 CCATCGCGCACCCTGGCGAGCCCGGCTACTACCCCTCGTACAAGGAGAACGGCGGCTCGC 120720 Query 20280 CCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGA 20339 ||||| | | || || | ||| ||| ||||| |||||| | || | ||| Sbjct 120719 CCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCCACGGACCTGTGGG 120660 Query 20340 GC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 | ||| | |||| ||||| | ||||| | ||||||||| | || || Sbjct 120659 ACTGGGCCGAGTTGAAGGAGAAGATCGCGCAGCACGGCATCCGCAACTCGCTCGTCTGCG 120600 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGT 20453 |||| ||||||||||| |||||| ||||||| | || ||||||||| |||||||||| Sbjct 120599 CGCCGATGCCGACCGCGTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGAGCCGT 120540 Query 20454 ACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGC 20513 ||||| ||||||||||| || || || ||||| |||||| || ||| ||| | Sbjct 120539 ACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTC--CA-GGTCGTCAACC 120483 Query 20514 ACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAA 20569 ||||| |||||||| | | || ||||| | || ||||| Sbjct 120482 -CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACACG 120424 Query 20570 ATTGTCCGAGC-CGGCGGGAGCGTCCAGG-CATTG--GATATCCCCCAGAACCTCAAGGA 20625 || || | || | ||| | ||||| | || | |||||| | | |||||| Sbjct 120423 ATCATC-GCGCACAACGGCTCCATCCAGAACGTTCCCGGCATCCCCGACGAGCTCAAGCG 120365 Query 20626 CATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCG 20685 ||| |||| |||||| ||||| ||| | |||||| | |||||||| | || ||||| || Sbjct 120364 CATCTACAAGACCGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCGCCGCCGACCG 120305 Query 20686 CGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGC 20745 |||||| | ||| |||||||| ||||||||||| ||| | | | |||| |||| Sbjct 120304 CGGCGCGTTCATTGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACTATGGC 120245 Query 20746 GAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTA 20805 | |||| | || ||||| | ||||||||| | ||||| ||||||||||||||||| || Sbjct 120244 GCAGCTCACGTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTATTA 120185 Query 20806 TCTGCGGACCCGAGCC 20821 || || || || ||| Sbjct 120184 CCTCCGCACTCGCGCC 120169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524539450720