Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq23 432 4e-116
>seq23
Length=148841
Score = 432 bits (478), Expect = 4e-116
Identities = 537/733 (73%), Gaps = 2/733 (0%)
Strand=Plus/Plus
Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229
||||||||||||| |||| | || | || ||||| ||||| || ||| ||| |||
Sbjct 121323 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 121382
Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289
||||| | | | || | || |||| ||||||| ||||| || | |
Sbjct 121383 CCAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442
Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349
| ||| ||||| | || || ||||| ||| | || || || |||| ||||| |
Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502
Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409
||| ||||||| ||| || ||| || ||||||||||||||| || |||||||| ||
Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562
Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469
||| | |||||| ||| | |||||| | ||| |||||| || || ||||| ||
Sbjct 121563 AAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 121622
Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529
|| | |||||||||||||||||||| || ||||||||||||| || |||||||
Sbjct 121623 CTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTT 121682
Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589
||| ||||||| |||||| || |||||||||||| | || ||||||||||| | ||||||
Sbjct 121683 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 121742
Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649
|| | | ||||||||| ||| ||| | ||| |||| || || || | | | |
Sbjct 121743 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATT-GTGGATCG 121801
Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708
|| |||||||| || | |||||||||| |||| ||| ||||||||| |||||||
Sbjct 121802 AGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAGA 121861
Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768
||||||||||||||||||||||||| | || |||||||| ||| | ||| ||||
Sbjct 121862 TGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCG 121921
Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828
||| |||||||||||||| ||||||| ||||||||| ||| || | ||| ||||
Sbjct 121922 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGAT 121981
Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888
||||||||| || |||| | |||||||||||||||||||||||||||||||||||
Sbjct 121982 TGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 122041
Query 79889 AGAGGTACTGGGG 79901
| || ||| ||
Sbjct 122042 GCATGTGCTGCGG 122054
Score = 365 bits (404), Expect = 5e-96
Identities = 531/744 (71%), Gaps = 12/744 (2%)
Strand=Plus/Minus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|| ||| || | ||||||| ||||||||||||||||| ||||||||| | || | |
Sbjct 122054 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCC 121995
Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222
|||||| ||| | || ||| || || ||| ||||||||| ||||||| || |||
Sbjct 121994 ATCGAGACGTACAATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTC 121935
Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282
|||||||| ||| |||||||| | ||| || ||||| || | |||||||| |||
Sbjct 121934 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGAC 121875
Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342
|| |||||||||||||| ||||||||| ||| |||| |||||||||| | ||
Sbjct 121874 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGACTGCAGGC 121815
Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401
|| ||||| || | | | | |||||||| ||| || | ||| || |||||
Sbjct 121814 GGCATCGGTCTCTCGATCCAC-AATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 121756
Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460
||| || ||| ||| ||| |||| ||||||||||| | |||||||||||| | ||||
Sbjct 121755 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACG 121697
Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520
|| ||||||| ||| ||| ||| ||| |||||||||||||||||||||| |||||||
Sbjct 121696 TCGACCAGGGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 121637
Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580
| ||| | | || |||||||| || ||| |||||| || | |||||| | || |
Sbjct 121636 CCGACATTTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCGC 121577
Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640
||||| | ||| || |||||||||| ||||| ||||||||| || ||| || |||
Sbjct 121576 GCGACTTGTTCTTTGCGCTGTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 121517
Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700
|| |||| ||| | ||||| ||| || || || | ||| |||||||| || |
Sbjct 121516 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTACGGTGACG 121457
Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760
|||||| ||| | | | || |||| |||| || ||| | | ||| |
Sbjct 121456 AGTTCAAGGAGCTCTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAA----GCGCACCGTG 121401
Query 19761 CCCG----GGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816
|||| | | ||||| || ||||||| | |||||||||||| |||| || | |
Sbjct 121400 CCCGCACAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTC 121341
Query 19817 ATGTGCTACAAGGACGCCGCGAAC 19840
||| ||||||||||||||| |||
Sbjct 121340 ATGCTCTACAAGGACGCCGCCAAC 121317
Score = 215 bits (238), Expect = 6e-51
Identities = 568/858 (66%), Gaps = 58/858 (7%)
Strand=Plus/Plus
Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242
|||||| || || | || ||||||||||||||||||||||||||||| ||||| | |||
Sbjct 120169 GGCGCGAGTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTG 120228
Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302
||| || |||| |||| | |||| | | | || |||||||||||| |||||
Sbjct 120229 CATCGACGTGAGCTGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTG 120288
Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362
||| ||| |||| ||||||||||| || | ||||||||| ||| |||| ||||||||
Sbjct 120289 GTCAATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCA 120348
Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC--CAGCGCT-TGTACGCTCCC 78419
| |||| ||| ||| ||| ||||| || ||||| | | || | || | | ||
Sbjct 120349 CACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCC 120408
Query 78420 ACCG-GCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGAT 78478
| || || | || ||||| || |||||| | | | || |
Sbjct 120409 GTTGTGCGCG-ATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGT 120467
Query 78479 CCCGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGT 78535
| ||| ||| ||| |||| | | |||||||||||| ||| ||||| ||
Sbjct 120468 CGCGG---AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGT 120524
Query 78536 AGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGG 78595
||||||||| ||||||||||||||| ||||||||| || | ||||||| |||||| |
Sbjct 120525 AGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACG 120584
Query 78596 CGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCT 78655
|||||||||| || ||| | || || || || | || ||| | ||||| |||
Sbjct 120585 CGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCT 120644
Query 78656 T----TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGA 78709
| | |||| |||||| | || | | || || ||||| ||| || | ||
Sbjct 120645 TCAACTCGGCCCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGA 120704
Query 78710 TACCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCC---CTC-- 78755
|| | | ||| ||||| | ||||| ||| ||| | || |||
Sbjct 120705 GGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGC 120764
Query 78756 -------CTCCTTGGCG-AGT-----------TCGC---ATGACTCGAGCAGGGCCGCGT 78793
| | ||||| ||| |||| | ||||||| | || ||||
Sbjct 120765 CAGGGTGCGCGATGGCGTAGTCGCGTGCCATGTCGCACGACGACTCGATC---GCGGCGT 120821
Query 78794 GGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAA 78853
|||| | | || ||||| |||||| | |||||||| || | |||||||| |
Sbjct 120822 GGTAGATCGTTTCAAAGATCTGTACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCA 120881
Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913
||| ||| ||||||| | ||||| || ||||| || |||||| ||||||| |||||||
Sbjct 120882 GGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGC 120941
Query 78914 GCATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTC 78972
| | |||||| | ||| |||| ||| | ||||| |||| ||||||| |||||||
Sbjct 120942 GGAAGTTGCTGCGTTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTC 121000
Query 78973 AGGTTACGCGTGACGACC 78990
||||| |||||| |||
Sbjct 121001 AGGTTGTACGTGACAACC 121018
Score = 199 bits (220), Expect = 4e-46
Identities = 564/856 (66%), Gaps = 54/856 (6%)
Strand=Plus/Minus
Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073
||| |||||| || ||||| ||| ||||||| |||| ||||| | ||| |||
Sbjct 121018 GGTTGTCACGTACAACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 120959
Query 20074 GCGCAAGTCG-AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACG 20132
|| | | | || | |||||||| ||||||| ||||| || ||||| || |||||||
Sbjct 120958 -CGAACGCAGCAACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGACG 120900
Query 20133 TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCA 20192
|||||| ||| |||| | |||||| ||| |||||||| | |||||| |
Sbjct 120899 CCTTCATGGCCCTCCGCCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTACAGA 120840
Query 20193 TCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA-----------ACT-CG 20240
|||| || | | |||||||| || || | |||||||| ||| ||
Sbjct 120839 TCTTTGAAACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCACGCGACTACG 120780
Query 20241 CCAAAGAGGACG-------GCCCG-----TACGAGACGTTCAAGGGG---------TCGC 20279
||| | | || ||||| ||| ||| ||||| | ||||
Sbjct 120779 CCATCGCGCACCCTGGCGAGCCCGGCTACTACCCCTCGTACAAGGAGAACGGCGGCTCGC 120720
Query 20280 CCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGA 20339
||||| | | || || | ||| ||| ||||| |||||| | || | |||
Sbjct 120719 CCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCCACGGACCTGTGGG 120660
Query 20340 GC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393
| ||| | |||| ||||| | ||||| | ||||||||| | || ||
Sbjct 120659 ACTGGGCCGAGTTGAAGGAGAAGATCGCGCAGCACGGCATCCGCAACTCGCTCGTCTGCG 120600
Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGT 20453
|||| ||||||||||| |||||| ||||||| | || ||||||||| ||||||||||
Sbjct 120599 CGCCGATGCCGACCGCGTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGAGCCGT 120540
Query 20454 ACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGC 20513
||||| ||||||||||| || || || ||||| |||||| || ||| ||| |
Sbjct 120539 ACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTC--CA-GGTCGTCAACC 120483
Query 20514 ACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAA 20569
||||| |||||||| | | || ||||| | || |||||
Sbjct 120482 -CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACACG 120424
Query 20570 ATTGTCCGAGC-CGGCGGGAGCGTCCAGG-CATTG--GATATCCCCCAGAACCTCAAGGA 20625
|| || | || | ||| | ||||| | || | |||||| | | ||||||
Sbjct 120423 ATCATC-GCGCACAACGGCTCCATCCAGAACGTTCCCGGCATCCCCGACGAGCTCAAGCG 120365
Query 20626 CATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCG 20685
||| |||| |||||| ||||| ||| | |||||| | |||||||| | || ||||| ||
Sbjct 120364 CATCTACAAGACCGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCGCCGCCGACCG 120305
Query 20686 CGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGC 20745
|||||| | ||| |||||||| ||||||||||| ||| | | | |||| ||||
Sbjct 120304 CGGCGCGTTCATTGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACTATGGC 120245
Query 20746 GAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTA 20805
| |||| | || ||||| | ||||||||| | ||||| ||||||||||||||||| ||
Sbjct 120244 GCAGCTCACGTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTATTA 120185
Query 20806 TCTGCGGACCCGAGCC 20821
|| || || || |||
Sbjct 120184 CCTCCGCACTCGCGCC 120169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524539450720
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