Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 358 7e-94 seq17 122 1e-22 seq10 122 1e-22 seq7 100 3e-16 seq15 87.8 2e-12 >seq23 Length=148841 Score = 358 bits (396), Expect = 7e-94 Identities = 517/719 (72%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||||||||| | || |||||||| |||||| | || || | | ||||||||| Sbjct 122041 TCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC-CGCGCCATCGAGACGTAC 121983 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | | ||| | ||||||||||||||| |||| || || |||||||| || ||| Sbjct 121982 AATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACG 121923 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| ||| Sbjct 121922 CCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGACTCGATCGAGGGC 121863 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| ||||||||| |||||| | |||||||||| | || || |||||| || Sbjct 121862 ATCTACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGACTGCAGGCGGCATCGGTCTC 121803 Query 53432 -CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | | | | || |||| |||| |||| | ||| || ||||||||| | | | Sbjct 121802 TCGATCCAC-AATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGAA 121744 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||| | || ||||||||||| | |||||||||||| || |||||| ||||||| || Sbjct 121743 CGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAGGGAGG 121684 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || |||||||||||||||||||||||||||||||||||||| | || Sbjct 121683 CAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTTTCGA 121624 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| ||||| || || ||| || || | || ||| | || ||| || ||| |||| Sbjct 121623 GTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCGCGCGACTTGTTCT 121565 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || ||||||||||| |||||||||||| | || ||| || ||| || ||| || Sbjct 121564 TTGCGCTGTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 121505 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | ||||| |||| ||||| ||||| | ||||||||||| ||||| || ||| Sbjct 121504 TCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTACGGTGACGAGTTCAAGGAGC 121445 Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 | | ||| || ||||| |||| ||| |||| | || || | || | Sbjct 121444 TCT-TCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCGTGCCCGCACAGAAGCTC 121386 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || ||||| || |||||| |||||||| | || | |||| ||||||||| Sbjct 121385 TGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 121327 Score = 154 bits (170), Expect = 2e-32 Identities = 322/465 (69%), Gaps = 21/465 (5%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || ||||| ||||| ||||||||||| |||||| | Sbjct 120624 GGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGCCAGATCCTC 120565 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct 120564 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCC 120505 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || | || ||| | | ||| || ||||| | | | | Sbjct 120504 GGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTG 120448 Query 55655 TGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--- 55707 |||||| ||| ||| |||| ||| || | || ||||| ||| ||||||| Sbjct 120447 TGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCCATCCAGAACGT 120392 Query 55708 TCTGGAGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 || | || || | || |||||| || ||| ||| ||||||||||| | |||| Sbjct 120391 TCCCGGCATCCC-CGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAGA 120333 Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 || ||| | || ||| | || || || || |||| ||| |||||||| ||||| || Sbjct 120332 AG-GTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATTGACCAGTCGCAGTCGCTC 120274 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 ||| || | | | || | |||| || | | ||||||||||||||||| ||| Sbjct 120273 AACGTCCACCTCTCGTCGCCGACTATGGCGCAGCTCACGTCGATGCACTTTTACGGCTGG 120214 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 |||||||| ||||||||||| ||||| || || || || |||||| Sbjct 120213 AAGAAGGGTCTCAAGACGGGCATGTATTACCTCCGCACTCGCGCC 120169 >seq17 Length=487578 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| |||||||| | ||||||||| || || | ||| Sbjct 147522 AAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGCACAAAGTCGTCGGGCTGGTCCTG 147463 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || |||||| |||||||| |||||||||| || | ||||| ||||||||||||||||| Sbjct 147462 CTGCAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCAGTCGCGCTTGGC 147403 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 147402 GTCGAGGTTGCCGAG 147388 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||| ||||| || || | | ||| || || || Sbjct 147534 CGCCTTCTCGACAAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGCACAAAGTCGTC 147475 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| |||||||| ||| |||||||| | | ||||||||| ||||| ||||| Sbjct 147474 GGGCTGGTCCTGCTGCAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCA 147415 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||| || ||||| ||||| Sbjct 147414 GTCGCGCTTGGCGTCGAGGTTGCCGAG 147388 >seq10 Length=1020928 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | ||||||||| |||||||| || || ||||| || ||||| Sbjct 39119 CGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTG 39060 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 39059 GCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGAC 39000 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||||||||||| || || |||||||| ||||| | ||||||| ||| || || Sbjct 38999 GATCGTGCCCTGCAGCGAAGCGTCGCCGTGGTGGTACGCTGAGTGCTCCGAGATATAGCC 38940 Query 152208 CG 152209 || Sbjct 38939 CG 38938 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || || |||||||| || |||||||||||||| || Sbjct 39118 GTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTGG 39059 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 39058 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 38999 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||| ||||| | ||||||| | |||||| Sbjct 38998 ATCGTGCCCTGCAGCGAAGCGTCGCCGTGGTGGTACGCTGAGTGCTCCGAGATATAGCCC 38939 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 38938 GAAAGCTGGCCGACCT 38923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 36813 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 36756 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| || | |||| |||||||||||||||||||| Sbjct 36755 TCGTAGTTCGAGGACGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 36709 >seq7 Length=1219073 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| ||||||||| || ||||| | || |||| ||||| | ||| Sbjct 219927 AAACTCGCGGACAGGGTGCGTCTCGCCCGTCGCGAGGACGTAGTCGTCTGGCTGGTCCTG 219986 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || | |||| |||||||| | |||||||| || ||||||| |||||||||||||| || Sbjct 219987 CTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTTGC 220046 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 220047 GTCGAGGTTGCCGAG 220061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| ||||||||| ||||| | | ||| | || || Sbjct 219915 CGCCTTCTCGACAAACTCGCGGACAGGGTGCGTCTCGCCCGTCGCGAGGACGTAGTCGTC 219974 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || |||||||||||| |||||||| ||| ||||||||| ||||| ||||| Sbjct 219975 TGGCTGGTCCTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCA 220034 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627 ||||||||| || || ||||| ||||| Sbjct 220035 GTCGCGCTTTGCGTCGAGGTTGCCGAG 220061 >seq15 Length=541629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 75071 CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTC 75130 |||| | |||||||| | |||||||| || ||||| || ||| || || || | Sbjct 263575 CTGGAAACCGTAGAAACAGCGCGCCTCGGCGATCTGCACCTCCGCCGAGAACCTCTCCAC 263634 Query 75131 GATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAA 75190 | ||||| |||||||||||||||| |||||||| || || || || ||| || Sbjct 263635 CAGGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCGAGGACGTGCGAGATGAA 263694 Query 75191 GTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 ||| ||||| | ||| || ||| |||||| ||| ||||||| Sbjct 263695 GTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCC 263737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215740072400