Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 188 8e-43 seq10 132 5e-26 seq4 127 2e-24 seq6 120 3e-22 seq9 111 2e-19 seq20 98.7 1e-15 seq17 84.2 2e-11 seq1 82.4 9e-11 >seq23 Length=148841 Score = 188 bits (208), Expect = 8e-43 Identities = 490/738 (66%), Gaps = 17/738 (2%) Strand=Plus/Plus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | ||| | || ||||||||||| | || ||||| ||||| | Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383 Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || | || ||| || | | | | ||| | ||||| | ||||| | Sbjct 121384 CAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCT----CGTACTTCTC 121439 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC-TCGTTAGGG 81195 | | |||| | | ||||| | |||||| | || ||| ||| |||| | ||| |||| Sbjct 121440 GAAGAGCTCCTT-GAACTCGTCACCGTAGACCTC-GTGGAGTCCGGGCGCCTCGGCAGGG 121497 Query 81196 CACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAG 81255 || | ||| |||||||| || | ||| ||| || |||||| ||| || ||||| Sbjct 121498 CAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAC 121557 Query 81256 AGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTC 81314 || || ||||| |||||| ||| || ||||||| | || ||||| ||| | || Sbjct 121558 AGCGCAAAGAACAAGTCGCGCGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTC 121616 Query 81315 GAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG 81374 ||| || || | ||||| || ||||| ||||| || || | ||||| || || ||| Sbjct 121617 GAGGAACTCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCG 121676 Query 81375 ACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 | || ||||||| |||||| || || || ||| | || || | ||| ||||| Sbjct 121677 CTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGAT 121736 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCT 81491 ||| || | || | |||||||| || |||| ||| || | ||||| | ||| Sbjct 121737 GATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTG 121796 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 ||| || ||||||||||| |||| ||| || || | |||||| || | || || Sbjct 121797 GATCGAGAGACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTC 121856 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || || |||||||| || | ||||| || | ||| || || | ||| || Sbjct 121857 GTAGATGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGG 121916 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | | |||||| ||||| || || || | |||||| | || || || | ||||| Sbjct 121917 GTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACAT 121976 Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731 || | || || || || |||| ||| ||||| ||||| || |||| || || || Sbjct 121977 GAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCG 122036 Query 81732 CATAAACATGTACTGGGG 81749 ||| | ||||| ||| || Sbjct 122037 CATGAGCATGTGCTGCGG 122054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 80679 GCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 |||||||| || |||||||| || || | |||||| |||| || || ||||| Sbjct 120856 GCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTG 120915 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 || ||||| |||||||||||||||| ||| || ||||||||| | ||||| Sbjct 120916 CACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGTTCGGCCTCCTTGACGGGGTA 120975 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACC 80841 |||| ||||||| ||||||||||||| || |||||| Sbjct 120976 GTAGTTGACGTCGATGATGCGGTTCAGGTTGTACGTGACAACC 121018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || || ||||||||||||||||| ||||||||||||||||| | |||| Sbjct 120170 GCGCGAGTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGC 120229 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || || | | | || ||| || ||||| ||||| Sbjct 120230 ATCGACGTGAGCTGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 120289 Query 80152 CAGATGAAAGCCCCACGATCTGCCGC 80177 ||||| || || || || || || Sbjct 120290 TCAATGAACGCGCCGCGGTCGGCGGC 120315 >seq10 Length=1020928 Score = 132 bits (146), Expect = 5e-26 Identities = 204/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| |||||||| | | ||||| | || || ||||||||||| || | Sbjct 38923 AGGTCGGCCAGCTTTCGGGCTATATCTCGGAGCACTCAGCGTACCACCACGGCGACGCTT 38982 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| |||||||| || ||| ||| || |||||||| ||||| || ||| | ||| Sbjct 38983 CGCTGCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 39042 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || ||| || |||||||| || || ||| Sbjct 39043 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 39102 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 | |||||||||||||| ||| |||| | ||||||| | | ||| |||| || || Sbjct 39103 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCTGA 39160 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 || ||| | ||| | ||| || ||||| ||| | |||||||| Sbjct 39161 TGACGCGATCCTCGACTACCTCAACGACGACGGGCAGAGCATCGAGCCG 39209 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 36703 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACGTCCTCGAACTACGACGACGAC 36762 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 ||| || || ||||||||||| || |||||||| || |||||||||||| Sbjct 36763 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 36813 >seq4 Length=1405664 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || ||||| ||||||||||| || | ||| | ||| | ||||| || || |||||| Sbjct 913762 ATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGAC 913821 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||||||||| ||||| ||||||||||| | || || || || ||||| |||||||| Sbjct 913822 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 913881 Query 27562 GATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | ||| || || ||| ||||| || |||| || || || || || || || || |||| Sbjct 913882 GGTCGCACGCTCAGC-GACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCG 913940 Query 27621 TCTTCGCGGTGG 27632 ||| ||||| || Sbjct 913941 TCTCCGCGGAGG 913952 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| |||||||| |||||||||||||| || || || Sbjct 913487 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCG 913546 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 913547 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 913606 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 913607 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 913635 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| || ||||| ||||||||||| | || || || Sbjct 914243 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCC 914302 Query 27544 GGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || | |||| || || || |||| || || || || Sbjct 914303 GGCAAGCAGCTTGAGGACGGACGCACGCTTAGC-GATTACAACATCCAGAAAGAGTCGAC 914361 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| |||||||| Sbjct 914362 CCTCCACCTCGTGCTGCGTCTCCGCGGTGG 914391 >seq6 Length=1276814 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 942304 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 942245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||||||||| |||||||| |||||| Sbjct 942244 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 942185 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG 27566 || || | || || || || ||||| |||||||| | ||| Sbjct 942184 CAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGTCG 942144 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || || ||||| ||||| || | ||| | || | ||||| || || |||||| Sbjct 941531 ATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGAC 941472 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||||||||| ||||| ||||||||||| | || || || || ||||| |||||||| Sbjct 941471 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 941412 Query 27562 GATCGTAC-CCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | ||| || | |||| ||||| || |||| ||||| || || || ||||| || ||| | Sbjct 941411 GGTCGCACGCTTAGC-GACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353 Query 27621 TCTTCGCGGTGGA 27633 | ||||| ||| Sbjct 941352 GTTGCGCGGAGGA 941340 >seq9 Length=1185843 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| | || || || Sbjct 462399 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCC 462340 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | ||| || || | ||||| || |||| ||||| || || Sbjct 462339 GGCAAGCAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACC 462280 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | ||||| |||||||| Sbjct 462279 CTCCACCTCGTCCTCCGTCTCCGCGGTGG 462251 >seq20 Length=382848 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || ||||| Sbjct 80817 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 80876 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || ||||| | || || || |||| ||||| || || Sbjct 80877 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACC 80936 Query 27604 CTTCATCTAGTC 27615 || || || ||| Sbjct 80937 CTCCACCTCGTC 80948 >seq17 Length=487578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24990 CTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATG 25049 || || ||||| || ||||| || || ||||| || || |||||||||||| | |||| Sbjct 147388 CTCGGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATG 147447 Query 25050 TGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCA 25108 ||||||||||| || ||| | |||| || || |||||| ||| || || |||| || Sbjct 147448 TGGCGCATGCTGCAGCAGGACCAGCCCGACGACTTTGTGCTCGCGACTGGCGAGACCCA 147506 >seq1 Length=1645103 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||| | ||||||||||| | || || || || ||| Sbjct 441732 AAGATCCAGGACAAGGATGGCATTCCGGCCGACCAGCAGCGCTTGATCTTCGCGGGCAAG 441791 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || | | || | || || ||||||| || || || || ||||| Sbjct 441792 CAGCTTGAGGATGGTCTTTCTCTCGGAGCATACCATGTCCAGAAAGAGTCGACCCTTCAC 441851 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || || || Sbjct 441852 CTTGTTCTCCGTCTCCGAGGAGG 441874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310129102560