Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 5e-12 seq9 84.2 2e-11 >seq4 Length=1405664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || ||||| || ||||| || ||||| || || | ||||||||| Sbjct 914249 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 914308 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | || || |||||||||||| || || ||||||||| | || Sbjct 914309 CAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGACCCTCCAC 914368 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCA 27216 | || ||||| | || ||||||| Sbjct 914369 CTCGTGCTGCGTCTCCGCGGTGGCA 914393 >seq9 Length=1185843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || ||||| || ||||| || ||||| || || | ||||||||| Sbjct 462393 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 462334 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || || |||| || |||||||| || |||||||||||| | || Sbjct 462333 CAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 462274 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || ||||| || Sbjct 462273 CTCGTCCTCCGTCTCCGCGGTGGTAT 462248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918193413760