Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20 143 6e-29 seq4 140 8e-28 seq6 132 1e-25 seq9 109 1e-18 seq1 96.9 8e-15 seq14 89.7 1e-12 seq23 84.2 5e-11 seq10 84.2 5e-11 >seq20 Length=382848 Score = 143 bits (158), Expect = 6e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| ||||||| ||||| | || || Sbjct 80950 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 80891 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 80890 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 80831 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||| ||||| || || |||||||| |||||| Sbjct 80830 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774 >seq4 Length=1405664 Score = 140 bits (154), Expect = 8e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| || || || || | || || Sbjct 913937 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCC 913878 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||| | ||| ||||||||| Sbjct 913877 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 913818 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||||||||| || |||||||||||||||||| Sbjct 913817 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||||| ||| || | || || Sbjct 913620 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 913561 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||||| || ||||||||| Sbjct 913560 TCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 913501 Query 211023 TGGATCTT 211030 || ||||| Sbjct 913500 TGAATCTT 913493 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| ||| || | ||| || Sbjct 914376 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTCC 914317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||| | || ||||||||| Sbjct 914316 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 914257 Query 211023 TGGATCTT 211030 || ||||| Sbjct 914256 TGAATCTT 914249 >seq6 Length=1276814 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || ||||||||||| |||||||| | |||||| ||||| ||||||| || ||| Sbjct 942147 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCC 942206 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || ||||| ||||| ||||| || || |||||||| ||| Sbjct 942207 TTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| || || | |||||| Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304 Score = 129 bits (142), Expect = 1e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || |||||||| || || ||| || | || || || Sbjct 941359 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCGTCCTCG 941418 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| | ||| || ||||| ||||| | ||| |||||||||||| Sbjct 941419 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 941478 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||| || ||||| ||||||||||| || || |||||||| |||||| Sbjct 941479 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATC 941532 >seq9 Length=1185843 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||| || | || || Sbjct 462266 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCC 462325 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 462326 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 462385 Query 211023 TGGATCTT 211030 |||||||| Sbjct 462386 TGGATCTT 462393 >seq1 Length=1645103 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGA--TGTTATAATCCGCAAGGGTCCTTCCAT 210960 || ||||||||||| || |||||||| |||| || ||| |||| || | |||| Sbjct 441859 AGAACAAGGTGAAGGGTCGACTCTTTCTGGACATGGTATGCTCCG--AGAGAAAGACCAT 441802 Query 210961 CTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGT 211020 | || ||||||||||| |||||||| | ||| || ||||| | |||| || ||||||| Sbjct 441801 CCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGCCGGAATGCCATCCTTGT 441742 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||||||| || |||| | ||| ||||| Sbjct 441741 CCTGGATCTTGCTCTTAACGTCGTAGATCGTGTC 441708 >seq14 Length=625571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || |||| || || | || ||||||||| Sbjct 125511 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGGATGCCCTCCTTGTCC 125452 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| |||| ||||| || || |||||||| |||||| Sbjct 125451 TGGATCTTGGCCTTGACGTTGTCGACCGTGTCCGACGACTCGACCTCGAGGGTGATC 125395 >seq23 Length=148841 Score = 84.2 bits (92), Expect = 5e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179 ||| || ||||| |||||||| | ||| ||| | || ||| |||| | | | Sbjct 121323 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 121382 Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| ||| || | || || ||||| || || ||||||||||| | | | Sbjct 121383 CCAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 |||||||| ||| || || ||||| || | ||| ||||| ||||| |||||||| Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||| ||| | |||| | || || || | |||||||||||| | |||| | || Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562 Query 178360 ATAGAA 178365 | |||| Sbjct 121563 AAAGAA 121568 >seq10 Length=1020928 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || || ||||| || | ||||| || | | || | | | |||||| ||| Sbjct 346280 AGGTGGAGCGTCGACTCGTTCTTGATGTCGTAGGCGCCGAGCGCGCGACGATCTTCAAGC 346339 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| ||||||||||| | ||| || |||| || || | || |||||||||||| || Sbjct 346340 TGCTTCCCTGCGAAGATCAAGCGCTGCCGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTC 346399 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 | || |||| | ||| ||||| || || |||||||| |||||| Sbjct 346400 TGGACCTTGACGTCGTAGATTGTGTCCGATGAGTCGACCTCGAGCGTGATC 346450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151435637870