Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq20 143 6e-29
seq4 140 8e-28
seq6 132 1e-25
seq9 109 1e-18
seq1 96.9 8e-15
seq14 89.7 1e-12
seq23 84.2 5e-11
seq10 84.2 5e-11
>seq20
Length=382848
Score = 143 bits (158), Expect = 6e-29
Identities = 138/177 (78%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| ||||||| ||||| | || ||
Sbjct 80950 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 80891
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| ||||| || |||||||| || | || |||||||||
Sbjct 80890 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 80831
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| ||||| ||||| || || |||||||| ||||||
Sbjct 80830 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774
>seq4
Length=1405664
Score = 140 bits (154), Expect = 8e-28
Identities = 137/177 (77%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| || || || || | || ||
Sbjct 913937 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCC 913878
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| ||||| | ||| |||||||||
Sbjct 913877 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 913818
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||||||||| || ||||||||||||||||||
Sbjct 913817 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761
Score = 114 bits (126), Expect = 3e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||||| ||| || | || ||
Sbjct 913620 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 913561
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || ||||| ||||||| || |||||||||
Sbjct 913560 TCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 913501
Query 211023 TGGATCTT 211030
|| |||||
Sbjct 913500 TGAATCTT 913493
Score = 109 bits (120), Expect = 1e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||| ||| || | ||| ||
Sbjct 914376 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTCC 914317
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| ||||| | || |||||||||
Sbjct 914316 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 914257
Query 211023 TGGATCTT 211030
|| |||||
Sbjct 914256 TGAATCTT 914249
>seq6
Length=1276814
Score = 132 bits (146), Expect = 1e-25
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|| || || ||||||||||| |||||||| | |||||| ||||| ||||||| || |||
Sbjct 942147 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCC 942206
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||| ||||| || ||||| ||||| ||||| || || |||||||| |||
Sbjct 942207 TTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| ||||| || || | ||||||
Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304
Score = 129 bits (142), Expect = 1e-24
Identities = 133/174 (76%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| || || || || ||||| || |||||||| || || ||| || | || || ||
Sbjct 941359 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCGTCCTCG 941418
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
||||||||||| |||||||| | ||| || ||||| ||||| | ||| ||||||||||||
Sbjct 941419 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 941478
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
||||| || ||||| ||||||||||| || || |||||||| ||||||
Sbjct 941479 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATC 941532
>seq9
Length=1185843
Score = 109 bits (120), Expect = 1e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || |||| ||| || | || ||
Sbjct 462266 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCC 462325
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| || || | || |||||||||
Sbjct 462326 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 462385
Query 211023 TGGATCTT 211030
||||||||
Sbjct 462386 TGGATCTT 462393
>seq1
Length=1645103
Score = 96.9 bits (106), Expect = 8e-15
Identities = 115/154 (75%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGA--TGTTATAATCCGCAAGGGTCCTTCCAT 210960
|| ||||||||||| || |||||||| |||| || ||| |||| || | ||||
Sbjct 441859 AGAACAAGGTGAAGGGTCGACTCTTTCTGGACATGGTATGCTCCG--AGAGAAAGACCAT 441802
Query 210961 CTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGT 211020
| || ||||||||||| |||||||| | ||| || ||||| | |||| || |||||||
Sbjct 441801 CCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGCCGGAATGCCATCCTTGT 441742
Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054
|||||||||| || |||| | ||| |||||
Sbjct 441741 CCTGGATCTTGCTCTTAACGTCGTAGATCGTGTC 441708
>seq14
Length=625571
Score = 89.7 bits (98), Expect = 1e-12
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || |||| || || | || |||||||||
Sbjct 125511 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGGATGCCCTCCTTGTCC 125452
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| |||| ||||| || || |||||||| ||||||
Sbjct 125451 TGGATCTTGGCCTTGACGTTGTCGACCGTGTCCGACGACTCGACCTCGAGGGTGATC 125395
>seq23
Length=148841
Score = 84.2 bits (92), Expect = 5e-11
Identities = 166/246 (67%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179
||| || ||||| |||||||| | ||| ||| | || ||| |||| | | |
Sbjct 121323 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 121382
Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239
||| |||| ||| || | || || ||||| || || ||||||||||| | | |
Sbjct 121383 CCAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 121442
Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299
|||||||| ||| || || ||||| || | ||| ||||| ||||| ||||||||
Sbjct 121443 GAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAA 121502
Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359
||| ||| | |||| | || || || | |||||||||||| | |||| | ||
Sbjct 121503 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGC 121562
Query 178360 ATAGAA 178365
| ||||
Sbjct 121563 AAAGAA 121568
>seq10
Length=1020928
Score = 84.2 bits (92), Expect = 5e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968
||||| || || ||||| || | ||||| || | | || | | | |||||| |||
Sbjct 346280 AGGTGGAGCGTCGACTCGTTCTTGATGTCGTAGGCGCCGAGCGCGCGACGATCTTCAAGC 346339
Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028
||||| ||||||||||| | ||| || |||| || || | || |||||||||||| ||
Sbjct 346340 TGCTTCCCTGCGAAGATCAAGCGCTGCCGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTC 346399
Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
| || |||| | ||| ||||| || || |||||||| ||||||
Sbjct 346400 TGGACCTTGACGTCGTAGATTGTGTCCGATGAGTCGACCTCGAGCGTGATC 346450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151435637870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |