Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 5e-18
seq6 91.5 4e-13
>seq4
Length=1405664
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| |||||||| | | |||
Sbjct 913629 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 913570
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| |||||||| || || || |||||||| ||||| ||
Sbjct 913569 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCC 913510
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| || |||||
Sbjct 913509 TCCTTGTCCTGAATCTT 913493
Score = 105 bits (116), Expect = 2e-17
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| ||||| ||| | ||
Sbjct 913946 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTG 913887
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || |||||||| | || || |||||||| || || ||
Sbjct 913886 CGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCC 913827
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| ||| ||||||||||| || | || || || |
Sbjct 913826 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCGAGA 913767
Query 225673 GTGATC 225678
||||||
Sbjct 913766 GTGATC 913761
>seq6
Length=1276814
Score = 91.5 bits (100), Expect = 4e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|||| || || ||||| || || || || |||| ||||| ||| | || | ||
Sbjct 941353 CTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCG 941412
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| || |||||||| || |||||||| | || || |||||||| || || || ||||||
Sbjct 941413 TCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 941472
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| |||||||| ||| || ||||||||||| || | || || || | ||||||
Sbjct 941473 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATC 941532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530619386372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |