Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq26 109 4e-19
seq25 109 4e-19
>seq26
Length=12709
Score = 109 bits (120), Expect = 4e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 30033 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30092
|||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | |
Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313
Query 30093 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30152
| |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || |
Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373
Query 30153 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211
||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | |
Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432
Query 30212 TTGGTCGTGAGGAGGGG 30228
|||||||| || || ||
Sbjct 12433 TTGGTCGTCAGAAGAGG 12449
Score = 102 bits (112), Expect = 7e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 29629 CCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688
|| ||||||||| || | ||||| || |||||||| ||||||||||| || || || ||
Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752
Query 29689 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747
| ||| || || | | | || | |||||||| |||| ||||||| ||| ||||
Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811
Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807
| | ||| ||||||||| ||||| || ||||| || | ||| | || | |||||| |
Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACA 11871
Query 29808 GCTGGCACGAGAG 29820
|||| |||||
Sbjct 11872 TGAGGCAGGAGAG 11884
>seq25
Length=12709
Score = 109 bits (120), Expect = 4e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 30033 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30092
|||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | |
Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313
Query 30093 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30152
| |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || |
Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373
Query 30153 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211
||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | |
Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432
Query 30212 TTGGTCGTGAGGAGGGG 30228
|||||||| || || ||
Sbjct 12433 TTGGTCGTCAGAAGAGG 12449
Score = 102 bits (112), Expect = 7e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 29629 CCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688
|| ||||||||| || | ||||| || |||||||| ||||||||||| || || || ||
Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752
Query 29689 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747
| ||| || || | | | || | |||||||| |||| ||||||| ||| ||||
Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811
Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807
| | ||| ||||||||| ||||| || ||||| || | ||| | || | |||||| |
Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACA 11871
Query 29808 GCTGGCACGAGAG 29820
|||| |||||
Sbjct 11872 TGAGGCAGGAGAG 11884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406163011895668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |