Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq26 111 1e-19 seq25 111 1e-19 >seq26 Length=12709 Score = 111 bits (122), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752 Query 27183 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241 | ||| || || | | | || | |||||||| |||| ||||||| ||| |||| Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811 Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 | | ||| ||||||||| |||||||| ||||| || | ||| | || | |||||| Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 11869 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 |||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | | Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646 | |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || | Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373 Query 27647 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 ||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | | Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432 Query 27706 TTGGTCGTGAGGAGGGG 27722 |||||||| || || || Sbjct 12433 TTGGTCGTCAGAAGAGG 12449 >seq25 Length=12709 Score = 111 bits (122), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752 Query 27183 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241 | ||| || || | | | || | |||||||| |||| ||||||| ||| |||| Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811 Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 | | ||| ||||||||| |||||||| ||||| || | ||| | || | |||||| Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 11869 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 |||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | | Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646 | |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || | Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373 Query 27647 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 ||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | | Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432 Query 27706 TTGGTCGTGAGGAGGGG 27722 |||||||| || || || Sbjct 12433 TTGGTCGTCAGAAGAGG 12449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507028871978