Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq26 111 1e-19
seq25 111 1e-19
>seq26
Length=12709
Score = 111 bits (122), Expect = 1e-19
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182
|| ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || ||
Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752
Query 27183 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241
| ||| || || | | | || | |||||||| |||| ||||||| ||| ||||
Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811
Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299
| | ||| ||||||||| |||||||| ||||| || | ||| | || | ||||||
Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 11869
Score = 109 bits (120), Expect = 4e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586
|||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | |
Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313
Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646
| |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || |
Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373
Query 27647 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705
||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | |
Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432
Query 27706 TTGGTCGTGAGGAGGGG 27722
|||||||| || || ||
Sbjct 12433 TTGGTCGTCAGAAGAGG 12449
>seq25
Length=12709
Score = 111 bits (122), Expect = 1e-19
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182
|| ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || ||
Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752
Query 27183 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241
| ||| || || | | | || | |||||||| |||| ||||||| ||| ||||
Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811
Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299
| | ||| ||||||||| |||||||| ||||| || | ||| | || | ||||||
Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 11869
Score = 109 bits (120), Expect = 4e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586
|||| || || ||||| | ||| ||| |||| | ||||| ||||| | | ||| | |
Sbjct 12254 ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTCGCGAGTCGAGGA 12313
Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646
| |||| | |||||| ||||||||||||| ||||||||||| | | | |||| || |
Sbjct 12314 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTTTCGAAT 12373
Query 27647 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705
||| | ||||| ||| ||||||| ||||||||| | || | | | | ||||| | |
Sbjct 12374 CGGTGCAGCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGACGCGC 12432
Query 27706 TTGGTCGTGAGGAGGGG 27722
|||||||| || || ||
Sbjct 12433 TTGGTCGTCAGAAGAGG 12449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507028871978
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |