Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq20 129 1e-24 seq4 120 6e-22 seq1 102 2e-16 seq9 100 6e-16 seq10 89.7 1e-12 seq14 86.0 1e-11 >seq6 Length=1276814 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||||||| | ||| || || |||||||||||||| ||||||||| || ||||| Sbjct 941359 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCGTCCTCG 941418 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || || || |||||||| || || ||||| || || ||||||||||| ||| Sbjct 941419 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 941478 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| || || ||| | ||||| |||||||| | ||||| ||||| |||||| Sbjct 941479 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATC 941532 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || || ||||| || || || || || |||||||| ||||| ||||| ||||| ||| Sbjct 942144 CGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCC 942203 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 |||||||| || ||||| || || ||| | ||||| ||||| |||| ||||| ||||| Sbjct 942204 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGG 942263 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 942264 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304 >seq20 Length=382848 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | || |||||||| ||||| || || || ||||||||| Sbjct 80929 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 80870 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || ||||||||||| |||||||| || || ||| | Sbjct 80869 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 80810 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 80809 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774 >seq4 Length=1405664 Score = 120 bits (132), Expect = 6e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||| |||||||| || ||||| || || || || || ||| Sbjct 913916 TCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAG 913857 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| || || ||||||||||| |||||||| || || || | Sbjct 913856 ATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 913797 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| ||||| || | || || |||||||||||| Sbjct 913796 TCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761 Score = 96.9 bits (106), Expect = 7e-15 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | || ||||| ||||||||||| || | Sbjct 914391 CCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTA 914332 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| |||||||| || || ||||| || Sbjct 914331 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 914272 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCG 283031 || ||||||||||| || ||||| || || | | |||||| Sbjct 914271 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACCTGTATCG 914232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 913599 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 913540 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| ||||| ||||||||||| || ||||| || || || Sbjct 913539 ATGAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAAC 913484 >seq1 Length=1645103 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || | ||| || | |||| |||| | || | ||| || | Sbjct 800169 CCGCCGCGCAGGCGCAGCAGCAGGTGAAGCGTGATTTCACGCTCGACGCCGTACTCGTCG 800110 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || |||||||| || ||||| || || ||||| ||| Sbjct 800109 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGG 800050 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA-AGCTTCGAC 283051 || ||||||||||| |||||| || ||||| | ||| ||||| || ||| ||||| Sbjct 800049 ATGCCCTCCTTGTCCTGGATCGCGAGCTTGACGGTCTGGATGGTGTCGGAGAGC-TCGAC 799991 Query 283052 TTCGAGAGTGATC 283064 ||||| || ||| Sbjct 799990 ATCGAGCGTCATC 799978 >seq9 Length=1185843 Score = 100 bits (110), Expect = 6e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || |||||||||||||| | Sbjct 462250 ACCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 462309 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || ||||| |||||||| || || ||||| || Sbjct 462310 AAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 462369 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || ||||||||||| |||||||| || || || Sbjct 462370 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 462402 >seq10 Length=1020928 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 |||||||| ||||| | || || || ||||||||| || || || | || ||| ||| Sbjct 39121 TTCGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAAC 39062 Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || | |||| | ||| ||| ||||||||||| |||||| | | ||| || | Sbjct 39061 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 39003 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| || ||||| || || | ||||||||||| || || ||| || | |||||| Sbjct 39002 GACGATCGTGCCCTGCAGCGAAGCGTCGCCGTGGTGGTACGCTGAGTGCTCCGAGATATA 38943 Query 273956 ACC 273958 || Sbjct 38942 GCC 38940 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || | ||||| |||| | | |||| ||| | ||| || || || ||||| || ||| Sbjct 346295 TCGTTCTTGATGTCGTAGGCGCCGAGCGCGCGACGATCTTCAAGCTGCTTCCCTGCGAAG 346354 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||| ||| || ||||||||||| ||| ||| | || ||| Sbjct 346355 ATCAAGCGCTGCCGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTGGACCTTGACGTCG 346414 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 | ||| |||||||| | ||||| ||||| |||||| Sbjct 346415 TAGATTGTGTCCGATGAGTCGACCTCGAGCGTGATC 346450 >seq14 Length=625571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||| || || |||| || || || || || ||||||| || || |||| ||| Sbjct 125526 AGCGAGCCACCGCCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGG 125467 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | |||| |||||||| | ||||| Sbjct 125466 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGACCGTGTCCGACGACTCGACC 125407 Query 283053 TCGAGAGTGATC 283064 ||||| |||||| Sbjct 125406 TCGAGGGTGATC 125395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738690368852