Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 3e-26
seq20 129 1e-24
seq4 120 6e-22
seq1 102 2e-16
seq9 100 6e-16
seq10 89.7 1e-12
seq14 86.0 1e-11
>seq6
Length=1276814
Score = 134 bits (148), Expect = 3e-26
Identities = 134/174 (77%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950
|||||||| | ||| || || |||||||||||||| ||||||||| || |||||
Sbjct 941359 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCGTCCTCG 941418
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
|| || || || || |||||||| || || ||||| || || ||||||||||| |||
Sbjct 941419 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 941478
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| || || ||| | ||||| |||||||| | ||||| ||||| ||||||
Sbjct 941479 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATC 941532
Score = 129 bits (142), Expect = 1e-24
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998
|| || ||||| || || || || || |||||||| ||||| ||||| ||||| |||
Sbjct 942144 CGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCC 942203
Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058
|||||||| || ||||| || || ||| | ||||| ||||| |||| ||||| |||||
Sbjct 942204 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGG 942263
Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 942264 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 942304
>seq20
Length=382848
Score = 129 bits (142), Expect = 1e-24
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||||||||| || | || |||||||| ||||| || || || |||||||||
Sbjct 80929 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 80870
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 80869 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 80810
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| ||||| ||||||
Sbjct 80809 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 80774
>seq4
Length=1405664
Score = 120 bits (132), Expect = 6e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| |||||||||||||| |||||||| || ||||| || || || || || |||
Sbjct 913916 TCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAG 913857
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| || || ||||||||||| |||||||| || || || |
Sbjct 913856 ATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 913797
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| ||||| || | || || ||||||||||||
Sbjct 913796 TCGATGGTGTCGGACGACTCAACCTCGAGAGTGATC 913761
Score = 96.9 bits (106), Expect = 7e-15
Identities = 118/160 (74%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || || || || || | || ||||| ||||||||||| || |
Sbjct 914391 CCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTA 914332
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 914331 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 914272
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCG 283031
|| ||||||||||| || ||||| || || | | ||||||
Sbjct 914271 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACCTGTATCG 914232
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || || ||||| || || ||||| || |||
Sbjct 913599 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 913540
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| | ||| || ||||| ||||| ||||||||||| || ||||| || || ||
Sbjct 913539 ATGAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAAC 913484
>seq1
Length=1645103
Score = 102 bits (112), Expect = 2e-16
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || | ||| || | |||| |||| | || | ||| || |
Sbjct 800169 CCGCCGCGCAGGCGCAGCAGCAGGTGAAGCGTGATTTCACGCTCGACGCCGTACTCGTCG 800110
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || |||||||| || ||||| || || ||||| |||
Sbjct 800109 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGG 800050
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA-AGCTTCGAC 283051
|| ||||||||||| |||||| || ||||| | ||| ||||| || ||| |||||
Sbjct 800049 ATGCCCTCCTTGTCCTGGATCGCGAGCTTGACGGTCTGGATGGTGTCGGAGAGC-TCGAC 799991
Query 283052 TTCGAGAGTGATC 283064
||||| || |||
Sbjct 799990 ATCGAGCGTCATC 799978
>seq9
Length=1185843
Score = 100 bits (110), Expect = 6e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 462250 ACCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 462309
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || ||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 462310 AAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 462369
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| ||||||||||| |||||||| || || ||
Sbjct 462370 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 462402
>seq10
Length=1020928
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836
|||||||| ||||| | || || || ||||||||| || || || | || ||| |||
Sbjct 39121 TTCGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAAC 39062
Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895
|| || | |||| | ||| ||| ||||||||||| |||||| | | ||| || |
Sbjct 39061 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 39003
Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955
||||| || ||||| || || | ||||||||||| || || ||| || | ||||||
Sbjct 39002 GACGATCGTGCCCTGCAGCGAAGCGTCGCCGTGGTGGTACGCTGAGTGCTCCGAGATATA 38943
Query 273956 ACC 273958
||
Sbjct 38942 GCC 38940
Score = 87.8 bits (96), Expect = 4e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || | ||||| |||| | | |||| ||| | ||| || || || ||||| || |||
Sbjct 346295 TCGTTCTTGATGTCGTAGGCGCCGAGCGCGCGACGATCTTCAAGCTGCTTCCCTGCGAAG 346354
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || |||| ||| || ||||||||||| ||| ||| | || |||
Sbjct 346355 ATCAAGCGCTGCCGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTGGACCTTGACGTCG 346414
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| |||||||| | ||||| ||||| ||||||
Sbjct 346415 TAGATTGTGTCCGATGAGTCGACCTCGAGCGTGATC 346450
>seq14
Length=625571
Score = 86.0 bits (94), Expect = 1e-11
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||| || || |||| || || || || || ||||||| || || |||| |||
Sbjct 125526 AGCGAGCCACCGCCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTTGGGCGGG 125467
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | |||| |||||||| | |||||
Sbjct 125466 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGACCGTGTCCGACGACTCGACC 125407
Query 283053 TCGAGAGTGATC 283064
||||| ||||||
Sbjct 125406 TCGAGGGTGATC 125395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738690368852
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