Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq4 91.5 1e-13 seq20 82.4 5e-11 >seq6 Length=1276814 Score = 98.7 bits (108), Expect = 7e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | || ||||||||||| || ||||| |||||| ||||||||||| ||| Sbjct 941339 TTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 941398 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| || |||||||| || || |||||||| |||||||| || | || Sbjct 941399 TAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 941458 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||| ||| | | | |||||||| | || || | Sbjct 941459 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGA 941518 Query 44289 CCTC 44292 |||| Sbjct 941519 CCTC 941522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| || || |||||||| || ||||| || | ||| | || |||| Sbjct 942148 CGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCT 942207 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | || ||||||| || || ||||| | || | Sbjct 942208 TGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGA 942267 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| || ||||||||||| ||||| || |||||| Sbjct 942268 TGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 942305 >seq4 Length=1405664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||| ||||| || || ||| || ||||||||||| || Sbjct 913956 CATACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTC 913897 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || |||||||| |||||||| || | Sbjct 913896 GCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 913837 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 913836 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGACGAC 913779 Query 44285 TCCACCTC 44292 || ||||| Sbjct 913778 TCAACCTC 913771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| ||||| || || ||| || ||||||||||||||| || ||| |||| Sbjct 914377 CAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTC 914318 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| ||||| |||||||| |||||||| || | ||| | || ||||| || Sbjct 914317 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 914258 Query 44245 CGTTATCTT 44253 | ||||| Sbjct 914257 CTGAATCTT 914249 >seq20 Length=382848 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| |||||||||||||| | ||| ||| |||| || Sbjct 80947 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 80888 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||| || | || | || ||||| ||| Sbjct 80887 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 80828 Query 44249 ATCTT 44253 ||||| Sbjct 80827 ATCTT 80823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990233279446