Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 7e-16
seq4 91.5 1e-13
seq20 82.4 5e-11
>seq6
Length=1276814
Score = 98.7 bits (108), Expect = 7e-16
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168
|||| || | || ||||||||||| || ||||| |||||| ||||||||||| |||
Sbjct 941339 TTCCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 941398
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
|| ||| |||| || |||||||| || || |||||||| |||||||| || | ||
Sbjct 941399 TAAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 941458
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| | || ||||| ||| ||||| ||| | | | |||||||| | || || |
Sbjct 941459 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGA 941518
Query 44289 CCTC 44292
||||
Sbjct 941519 CCTC 941522
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240
|||| || |||||||| || || |||||||| || ||||| || | ||| | || ||||
Sbjct 942148 CGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCT 942207
Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
| ||| ||||| ||| | | | || ||||||| || || ||||| | || |
Sbjct 942208 TGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGA 942267
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| ||||| || ||||||||||| ||||| || ||||||
Sbjct 942268 TGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 942305
>seq4
Length=1405664
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/188 (71%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||| ||||| || || ||| || ||||||||||| ||
Sbjct 913956 CATACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTC 913897
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| ||| |||| || |||||||| || || |||||||| |||||||| || |
Sbjct 913896 GCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 913837
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284
||| | || ||||| ||| ||||| ||| || ||| | |||||||||| ||
Sbjct 913836 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGACGAC 913779
Query 44285 TCCACCTC 44292
|| |||||
Sbjct 913778 TCAACCTC 913771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||| ||||| || || ||| || ||||||||||||||| || ||| ||||
Sbjct 914377 CAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTC 914318
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| |||||||| ||||| |||||||| |||||||| || | ||| | || ||||| ||
Sbjct 914317 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 914258
Query 44245 CGTTATCTT 44253
| |||||
Sbjct 914257 CTGAATCTT 914249
>seq20
Length=382848
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| |||||||||||||| | ||| ||| |||| ||
Sbjct 80947 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 80888
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||| | |||||||| || | || | || ||||| |||
Sbjct 80887 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 80828
Query 44249 ATCTT 44253
|||||
Sbjct 80827 ATCTT 80823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990233279446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |