Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 140 8e-28 seq20 120 7e-22 seq4 120 7e-22 seq14 95.1 3e-14 seq9 91.5 4e-13 >seq6 Length=1276814 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 941532 GATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGA 941473 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || ||||||||||| |||||||| || | |||||||| || || |||||||| || Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || | || ||| ||| || ||| |||| || || || || || ||||| || ||||| Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 942301 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 942242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || ||||| ||||||||| Sbjct 942241 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAA 942182 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | |||||||| || || |||||||| || || Sbjct 942181 CGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGG 942147 >seq20 Length=382848 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 80774 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 80833 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| || Sbjct 80834 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 80893 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || | ||||| ||| |||| || || || || || || || || Sbjct 80894 CGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 80947 >seq4 Length=1405664 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 |||||| |||||||| || || ||||||||||| || ||||| ||||| ||||| Sbjct 913761 GATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGA 913820 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || ||||||||||| |||||||| || | |||||||| || || |||||||| || Sbjct 913821 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 913880 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || ||| || ||| |||| ||||| || || || || || || Sbjct 913881 CGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGT 913934 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || ||||| |||||||| || || |||||||| || || Sbjct 913493 AAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAG 913552 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 913553 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 913612 Query 178125 CTTGT 178129 || || Sbjct 913613 CTCGT 913617 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || |||||||| |||||||| || | ||||||||||| || Sbjct 914249 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 914308 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| | || ||| |||||| ||| |||| ||||| || || || || Sbjct 914309 CAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGACCCTCCAC 914368 Query 178125 CTTGT 178129 || || Sbjct 914369 CTCGT 914373 >seq14 Length=625571 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| |||| |||||||| ||||| ||||| Sbjct 125395 GATCACCCTCGAGGTCGAGTCGTCGGACACGGTCGACAACGTCAAGGCCAAGATCCAGGA 125454 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGA 178072 ||| || || ||||| || ||||||| || || |||||||| || || |||||||| Sbjct 125455 CAAGGAGGGCATCCCGCCCAACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGA 125511 >seq9 Length=1185843 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || | ||||||||||| || Sbjct 462393 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 462334 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | || || ||| |||| || || || || || || Sbjct 462333 CAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 462274 Query 178125 CTTGT 178129 || || Sbjct 462273 CTCGT 462269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730613933372