Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 8e-28
seq20 120 7e-22
seq4 120 7e-22
seq14 95.1 3e-14
seq9 91.5 4e-13
>seq6
Length=1276814
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct 941532 GATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGA 941473
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || ||||||||||| |||||||| || | |||||||| || || |||||||| ||
Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
|| | || ||| ||| || ||| |||| || || || || || ||||| || |||||
Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353
Score = 131 bits (144), Expect = 4e-25
Identities = 122/155 (79%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 942301 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 942242
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| |||||||||||||| || || || ||||| |||||||||
Sbjct 942241 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAA 942182
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|| | |||||||| || || |||||||| || ||
Sbjct 942181 CGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGG 942147
>seq20
Length=382848
Score = 120 bits (132), Expect = 7e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| ||||| |||||
Sbjct 80774 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 80833
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| ||
Sbjct 80834 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 80893
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | || || | ||||| ||| |||| || || || || || || || ||
Sbjct 80894 CGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 80947
>seq4
Length=1405664
Score = 120 bits (132), Expect = 7e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
|||||| |||||||| || || ||||||||||| || ||||| ||||| |||||
Sbjct 913761 GATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGA 913820
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || ||||||||||| |||||||| || | |||||||| || || |||||||| ||
Sbjct 913821 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 913880
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | || || ||| || ||| |||| ||||| || || || || || ||
Sbjct 913881 CGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGT 913934
Score = 104 bits (114), Expect = 6e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || || ||||| |||||||| || || |||||||| || ||
Sbjct 913493 AAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAG 913552
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | |||||| | ||||| ||| |||| ||||| || || || ||
Sbjct 913553 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 913612
Query 178125 CTTGT 178129
|| ||
Sbjct 913613 CTCGT 913617
Score = 104 bits (114), Expect = 6e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || |||||||| |||||||| || | ||||||||||| ||
Sbjct 914249 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 914308
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || || ||| | || ||| |||||| ||| |||| ||||| || || || ||
Sbjct 914309 CAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGACCCTCCAC 914368
Query 178125 CTTGT 178129
|| ||
Sbjct 914369 CTCGT 914373
>seq14
Length=625571
Score = 95.1 bits (104), Expect = 3e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| |||| |||||||| ||||| |||||
Sbjct 125395 GATCACCCTCGAGGTCGAGTCGTCGGACACGGTCGACAACGTCAAGGCCAAGATCCAGGA 125454
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGA 178072
||| || || ||||| || ||||||| || || |||||||| || || ||||||||
Sbjct 125455 CAAGGAGGGCATCCCGCCCAACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGA 125511
>seq9
Length=1185843
Score = 91.5 bits (100), Expect = 4e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||| || |||||||| || | ||||||||||| ||
Sbjct 462393 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 462334
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | |||||| | || || ||| |||| || || || || || ||
Sbjct 462333 CAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 462274
Query 178125 CTTGT 178129
|| ||
Sbjct 462273 CTCGT 462269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730613933372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |