Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq9 118 1e-21
seq20 109 5e-19
seq6 109 5e-19
seq4 105 6e-18
seq1 93.3 4e-14
>seq9
Length=1185843
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||||||||| ||||| ||||| ||
Sbjct 462251 CCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 462310
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||||||||| |||| |||||| ||||| | |||
Sbjct 462311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 462370
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 462371 ATGCCCTCCTTGTCCTGGATCTT 462393
>seq20
Length=382848
Score = 109 bits (120), Expect = 5e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| || || ||||||||||| |||| ||||||||||||||||| ||
Sbjct 80930 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 80871
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| |||||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 80870 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 80823
>seq6
Length=1276814
Score = 109 bits (120), Expect = 5e-19
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
||||||||||| ||||| ||||||||| ||||| |||||| || ||||| ||||
Sbjct 941356 AACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGACCGTCC 941415
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|||||||||||||| ||||| |||| |||||| ||||| | || | | ||||||||||
Sbjct 941416 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 941475
Query 41771 ATGATTTT 41778
||| ||
Sbjct 941476 TGGATCTT 941483
Score = 104 bits (114), Expect = 2e-17
Identities = 120/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765
|||| |||||||||||||| ||||| |||| ||| || ||||| | |||| || |||||
Sbjct 942148 CGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCT 942207
Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| | || || | ||| | | | |||||| ||||| ||||| | ||
Sbjct 942208 TGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTG 942266
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || || || ||||| |||||||||||||||
Sbjct 942267 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 942305
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| |||||||| || || | || || ||||||||| || || | | || |||
Sbjct 577995 CCCCCGCCGCGCAGGCGCAGCAGCAAGTGCAGCGTGGCGTCACGCTCGACGCCGTACTCG 578054
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
||||| |||| | ||| ||||||||||||||| |||| | |||||||| ||||| |
Sbjct 578055 TAGAGGTTGCGGTTGTCCTCGAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCGGGC 578114
Query 41753 GGAACGCTCTCCTTGTCCATGATTTT 41778
|| | || |||||||||| ||| ||
Sbjct 578115 GGGATGCCCTCCTTGTCCTGGATCTT 578140
>seq4
Length=1405664
Score = 105 bits (116), Expect = 6e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || || || ||| ||||| ||||| |||||| |
Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| |||| |||||| ||||| | ||
Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | |||||| |||||| |
Sbjct 913832 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGACGACTCAA 913775
Query 41814 CCTC 41817
||||
Sbjct 913774 CCTC 913771
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || |||
Sbjct 914392 GCCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCT 914333
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||||||||| |||| |||||| ||||| | ||
Sbjct 914332 AAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 914273
Query 41755 AACGCTCTCCTTGTCC 41770
| || ||||||||||
Sbjct 914272 GATGCCCTCCTTGTCC 914257
Score = 96.9 bits (106), Expect = 3e-15
Identities = 114/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 913635 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 913576
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| || ||||| || || ||||| ||||| | |||
Sbjct 913575 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 913516
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC 41788
| || |||||||||| ||| | || || | |||
Sbjct 913515 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTAAC 913484
>seq1
Length=1645103
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| || || | || ||| || |||||| | || || | | || |||
Sbjct 800170 GCCGCCGCGCAGGCGCAGCAGCAGGTGAAGCGTGATTTCACGCTCGACGCCGTACTCGTC 800111
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| ||||||||||| |||||||| |||| |||||| ||||| | ||
Sbjct 800110 GAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGG 800051
Query 41755 AACGCTCTCCTTGTCC 41770
| || ||||||||||
Sbjct 800050 GATGCCCTCCTTGTCC 800035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303780405600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |