Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq130 125 8e-24 >seq130 Length=202609 Score = 125 bits (138), Expect = 8e-24 Identities = 403/618 (65%), Gaps = 8/618 (1%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||| | || ||||| | |||||||| |||| | || ||||| ||||| Sbjct 60753 CCGGGGCATTCGGCGGGGCACATAAGAGACCACTCGCCGTTCTGCTCGACTCGCTTCATG 60694 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || || ||||| ||||| || || || | || | || || || || Sbjct 60693 AACAGGTCCGGGATCCAGAGAGCGTAGAAGAGCTCACGGGCGCGGACCTCTTCCTTGCCA 60634 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || ||||||||| | | | || || ||||| || || | ||| ||| Sbjct 60633 TGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCGATGTAGATG 60574 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || ||||| ||||| || || || || | || || |||||||| || || Sbjct 60573 GCAAAGGCACCGGGCCGCTTGTTGCCACCTTGGTCGACATACCTTGCGGTGTTGTTGTAG 60514 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| | ||| || | || || ||||| |||| ||||| |||| || || || Sbjct 60513 ACTCGGAGCATGGGCACGATGCCGTTGGAGACACCGTTGGTACCGGCAATGTATGAACCG 60454 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 || ||||||| | | || | ||||| || || || || | || ||| | || Sbjct 60453 GTGCCACGAATGC-AGTGGATGTTGAGACCGATGCCACCGGCTGTCTTGCTGATCATGGC 60395 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| || | || || ||||||||||| || || ||| ||||| | | || || Sbjct 60394 GCAGGTCTTGAGGGTGTCGTAGATGCCCTCGATGGAGTCGTCCTTCATGGTGACGAGGAA 60335 Query 54400 ACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 || |||||||| | | | | || || ||||| || | || || || || || | Sbjct 60334 GCATGACGACATTTGCGGGTTGGGT-GTGCCGGCATTGAAGAGCGTCGGCGAGGCATGGG 60276 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA- 54517 | || | || || || | | ||||| ||||| || || ||| || || |||| Sbjct 60275 TGAAGTACTTCTCCGACATCAAGTTGTATGTCTCAATCGCCTTGTCGATGTC--ATTGCC 60218 Query 54518 -TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||||| || || || |||||||| | |||||||||||| || || | | |||| ||| Sbjct 60217 GTGAATACCGACAGCAACACGCATGAGCATGTGCTGAGGCCTCTCGGCCACCTTGCCGTT 60158 Query 54577 TATTTTCAGCAAGTAGGA 54594 || | |||| ||| || Sbjct 60157 GATCCTGAGCAGGTACGA 60140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719143476880