Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq206 260 1e-64 seq125 152 5e-32 seq59 143 3e-29 seq41 123 3e-23 seq146 120 3e-22 >seq206 Length=170121 Score = 260 bits (288), Expect = 1e-64 Identities = 351/486 (72%), Gaps = 2/486 (0%) Strand=Plus/Minus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||||||| ||||| || || |||||| |||||||||| ||||| || || |||||| Sbjct 151691 ACGCCATTGAGACCATCCCCGTCGTCAAGCAGAAGGCCGACTGGGCTCTCCGATGGATCT 151632 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 ||| || || | | |||| |||||||| || ||||| || |||||||||||| ||| Sbjct 151631 CCGACACGGACTCGACGTTCGCGGAGCGCCTCGTTGCCTTTGCTGCCGTCGAGGGCATCT 151572 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| || ||| ||||| |||| || ||||||||||| ||||| || |||||||||| Sbjct 151571 TCTTCTCCGGCTCCTTCGCGTCCATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCC 151512 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| ||||||||| ||| | | |||||||| |||| |||||||||||| Sbjct 151511 TCACCTTCTCCAACGAGCTGATCAGCCGAGACGAGGGCTTGCACACCGACTTTGCCTGCC 151452 Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCG 117251 | ||||||| || | |||| || | ||| |||| ||| |||||| Sbjct 151451 TCCTGTTCAGCCACCTCCGAAAGCGGCCCCACCCGGACGTCGTCCTCCGCATCATCACCG 151392 Query 117252 ACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGAC 117311 | || || ||||||||||| |||||||||||| ||||| || || || | || Sbjct 151391 AGGCTGTGACCATCGAGCAGGCCTTCCTCACCGACGCGCTCCCCGTCTCGCTCATCGGCA 151332 Query 117312 TCAA-TTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | || | ||| | ||| || |||||||||||||| |||||| | ||||| | | Sbjct 151331 TGAACTCGCGGCTC-ATGAGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTCGTTTCG 151273 Query 117371 CTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 || | | || ||||||||||||| || ||||||| | ||||||||| | |||||| Sbjct 151272 CTCGGCAACGACAAGCACTACAACGCGAGCAACCCGTTCGACTTTATGGAGAACATCTCT 151213 Query 117431 TTGGAG 117436 ||| || Sbjct 151212 TTGCAG 151207 Score = 203 bits (224), Expect = 3e-47 Identities = 188/235 (80%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | ||| || Sbjct 152073 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCTGAGGAGATCGACTTG 152014 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||||||||| | ||||||||| | | |||||||| |||||||| ||||||| Sbjct 152013 TCCAAGGACATGCACGACTGGGACAACAGGCTCAACGACAATGAGCGCCACTTCATCAGC 151954 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| || || ||| ||||| ||||||||||||||||| || ||||| Sbjct 151953 CACGTCCTTGCCTTCTTTGCTGCCTCGGACGGTATCGTCAACGAGAATCTCGTTGAGCGA 151894 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| |||| | ||||||||| |||||||| || |||||||||||||| |||||| Sbjct 151893 TTCAGCTCCG-AGGTGCAGGCCGCCGAGGCCCGCTGCTTCTACGGCTTCCAGATC 151840 >seq125 Length=635640 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || |||||||| ||||| || |||||| |||| ||||| || Sbjct 378383 AAGATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCC 378442 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 ||||| | | | |||| ||||| || || | ||||| ||||||||||| | || Sbjct 378443 GGCGACACCATTGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCAGA 378501 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || ||||| ||||| || |||| |||||| | |||||| Sbjct 378502 CCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTA 378561 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || ||||| || Sbjct 378562 CAACATCCAGAAGGAGTCCACCCTCCATCTCGT 378594 >seq59 Length=598887 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || || Sbjct 73220 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCCGGT 73161 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 73160 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 73101 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || ||||| ||||| || |||| |||||||| ||||||||| Sbjct 73100 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTTGCGGACTACAAC 73041 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || ||||| ||| | ||| || | || || Sbjct 73040 ATCCAGAAGGAGTCGACCCTCCATCTTGTGCTTCGCCTGCGTGGTGG 72994 >seq41 Length=375347 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40701 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA 40760 ||| || || ||||| ||||| || |||||| |||| || || | |||| | | | Sbjct 19440 CGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGGGGGACACCATCGA 19499 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 | ||||| || |||| ||||| |||||||||||| | |||||||| || || || Sbjct 19500 CAATGTCAAGACCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGGCTGAT 19559 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || |||| ||||| || ||||||||||||||||||||| Sbjct 19560 CTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACACTGGCCGACTACAACATCCAGAAGGA 19619 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 19620 GTCGACCCTTCACCTTGT 19637 >seq146 Length=265622 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || || || ||||| ||||| ||| |||| ||||| | |||| | | Sbjct 40440 GTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCTGGTGACACGATCGAC 40381 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || || | ||||| |||||||| || | ||||||||||||||||| Sbjct 40380 AACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAGCAACGACTCAT 40322 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || |||| ||||| ||| |||||||||||||||||||| Sbjct 40321 CTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGACTACAACATCCAGAAGGA 40262 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 40261 GTCTACTCTCCACCTTGT 40244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217068280560