Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq125 122 8e-23 seq146 104 2e-17 seq41 104 2e-17 seq59 102 7e-17 >seq125 Length=635640 Score = 122 bits (134), Expect = 8e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| || ||||| || |||||||| Sbjct 378588 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGC 378529 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTT 118654 || || || |||||||||||||||| || || || |||||||||||||| || | | | Sbjct 378528 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGA--TCT 378471 Query 118655 TTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || || | || | |||||| | ||||||||||| ||| | ||| ||||| | Sbjct 378470 TGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTCTTGCCTG 378411 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||| |||||||| Sbjct 378410 TGAGCGTCTTGACAAAGATCTGCAT 378386 >seq146 Length=265622 Score = 104 bits (114), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| || | ||||| ||||||||||| Sbjct 40249 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCGAGCTG 40308 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || |||||| ||||||| || ||||| || || || ||||||||||||| ||| | | Sbjct 40309 CTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGA--TC 40366 Query 118654 TTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || || | |||| ||||| ||||||||||| ||| | || ||||| Sbjct 40367 TTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTGCCA 40426 Query 118713 GTCAGAGTTTTTACA 118727 ||||| || || ||| Sbjct 40427 GTCAGGGTCTTGACA 40441 >seq41 Length=375347 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| ||||| ||||| || || Sbjct 19625 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCG 19566 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| || || || |||||||||||||| ||| || || Sbjct 19565 GCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTG 19506 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||||| ||| ||||||| ||| | ||| |||||||| || || Sbjct 19505 ACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 19446 Query 118722 TTTAC 118726 || || Sbjct 19445 TTGAC 19441 >seq59 Length=598887 Score = 102 bits (112), Expect = 7e-17 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||||||| Sbjct 73013 CAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCGA 73072 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTA 118649 |||| || || || |||| || || ||||| || || || ||||||||||||| ||| | Sbjct 73073 GCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGA 73132 Query 118650 ATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 | || || || || | |||| |||||| | ||| ||||||| ||| | ||| || Sbjct 73133 --TCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTCTT 73190 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 73191 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 73221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828649901052