Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq130 125 2e-23 >seq130 Length=202609 Score = 125 bits (138), Expect = 2e-23 Identities = 419/645 (65%), Gaps = 8/645 (1%) Strand=Plus/Plus Query 248822 ATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCG 248881 ||| ||| | ||||| || || ||| ||||| || |||| || | |||||| | | Sbjct 60111 ATTACTTCGGATTCAAGACCCTCGAGCGCTCGTACCTGCTCAGGATCAACGGCAAGGTGG 60170 Query 248882 TGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAG 248941 || | |||||||||| | ||||| || |||||||| |||||| ||||||| | Sbjct 60171 CCGAGAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCACGGCAATGACATCG 60230 Query 248942 AGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001 | | | | | ||||| |||| | ||| || | | || |||||| | |||| Sbjct 60231 ACAAGGCGATTGAGACATACAACTTGATGTCGGAGAAGTACTTCACCCATGCCTCGCCGA 60290 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 |||||||||| ||||| || |||| || || || ||||| || | ||||| Sbjct 60291 CGCTCTTCAATGCCGGCACACCCAACCCGCAAATGTCGTCATGCTTCCTCGTCACCATGA 60350 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 | |||||||| |||| ||||| || ||||| || || || | || | ||| || Sbjct 60351 AGGACGACTCCATCGAGGGCATCTACGACACCCTCAAGACCTGC-GCCATGATCAGCAAG 60409 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 || || || ||||||||| | || | ||| || | | ||||| ||||| Sbjct 60410 ACAGCCGGTGGCATCGGTCTCAACATCCACTGCATTCGTGGCACCGGTTCATACATTGCC 60469 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 ||||| || || ||| | || ||||| ||| | || ||| || | |||||| Sbjct 60470 GGTACCAACGGTGTCTCCAACGGCATCGTGCCCATGCTCCGAGTCTACAACAACACCGCA 60529 Query 249241 AGGTTCATCAACCAGGCCGGGCGCCGAAAGG---GGT-CGTTCGCCATGTATTTGGAAGT 249296 |||| || |||| | ||| | | || ||| | || ||||| || | || Sbjct 60530 AGGTATGTCGACCAAG-GTGGCAACAAGCGGCCCGGTGCCTTTGCCATCTACATCGAGCC 60588 Query 249297 GTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCAT 249356 |||||| | || | || |||||||| ||| | |||||| | ||||| || | Sbjct 60589 CTGGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCATGGCAAGGAAGAGGT 60648 Query 249357 GAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAA 249416 | || ||||| |||||||||| || ||| || | ||| |||||||| || ||| | Sbjct 60649 CCGCGCCCGTGAGCTCTTCTACGCTCTCTGGATCCCGGACCTGTTCATGAAGCGAGTCGA 60708 Query 249417 GGCCGACGGCGATTGGACGCTTCT-TTCTCCGTCCGACGCCCCGG 249460 | ||||||| ||| | ||| | | | ||| | | ||||||| Sbjct 60709 GCAGAACGGCGAGTGGTCTCTTATGTGCCCCGCCGAATGCCCCGG 60753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761846223808