Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq41 123 2e-23 seq59 111 1e-19 seq125 107 2e-18 seq146 84.2 2e-11 >seq41 Length=375347 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| | ||| || || ||||||||| |||||||||||| |||| ||| |||| || Sbjct 19638 TACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTC 19579 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || |||||||| |||| |||||| ||||| || || | |||||||||||| Sbjct 19578 AAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 19519 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | ||||||| ||||||||| | ||| |||||||| Sbjct 19518 AATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTT 19459 Query 45307 GCCCGTCAGAGTCTTCAC 45324 ||| || || ||||| || Sbjct 19458 GCCGGTGAGGGTCTTGAC 19441 >seq59 Length=598887 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || |||| |||| || || || || ||||| || Sbjct 73029 CTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAA 73088 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || || ||||| || || | |||||||||||| || || ||| || Sbjct 73089 GATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 73148 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||||||| | ||| |||||||||||||| || ||||| || Sbjct 73149 GTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 73208 Query 45325 AAAGATTTGCATGTTG 45340 ||||| |||||| || Sbjct 73209 GAAGATCTGCATGCTG 73224 >seq125 Length=635640 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 378588 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGC 378529 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || || | ||||| ||||| || || | |||||||||||| || || Sbjct 378528 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTG 378469 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| || ||| ||||| | ||| ||||||||||| || Sbjct 378468 GTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTCTTGCCTGTG 378409 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| |||||||| ||||| ||| Sbjct 378408 AGCGTCTTGACAAAGATCTGCATCTTG 378382 >seq146 Length=265622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || || || ||||| Sbjct 40261 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 40320 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | |||||||||||| || || ||| || Sbjct 40321 GATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 40380 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||| ||||| | |||||| |||||||| ||||| ||||| || Sbjct 40381 GTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 40440 Query 45325 A 45325 | Sbjct 40441 A 40441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073606241951