Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq130 134 2e-26 seq206 118 1e-21 >seq130 Length=202609 Score = 134 bits (148), Expect = 2e-26 Identities = 403/615 (66%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | || | | | | | || ||||| | || ||||| | ||| Sbjct 60783 TCGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTCGGCGGGGCACATAAGAGAC 60724 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| | || ||||| ||||| || || || || ||||| ||||| || Sbjct 60723 CACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGGGATCCAGAGAGCGTAGAAG 60664 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || || | | | || || || || ||||| || ||||||||| | | Sbjct 60663 AGCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCGGAGGTCGAGGAACTCAAAG 60604 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | || || ||||| || || | ||| ||||| | | || ||||| ||||| || || Sbjct 60603 ACGTCCGAGTGCCAGGGCTCGATGTAGATGGCAAAGGCACCGGGCCGCTTGTTGCCACCT 60544 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | || || |||||||| || || |||| | ||| || | || ||||| || Sbjct 60543 TGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACC 63547 | ||| |||||||||| || || || || ||||||| | | || | ||||| Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATGC-AGTGGATGTTGAGACC 60425 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || | || ||| | ||||| || | ||||| |||||||| || Sbjct 60424 GATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCTC 60365 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGAGTAGTTC 63666 ||| || || ||||| | | || || || |||||||| | | | || || | Sbjct 60364 GATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGT-GTGC 60306 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | ||||| || | || || || || || || || | || || || | | ||||| | Sbjct 60305 CGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGACATCAAGTTGTATG 60246 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACAT 63784 ||||||| || ||| || || |||| ||||| || || || |||||||| | ||| Sbjct 60245 TCTCAATCGCCTTGTCGATGTC--ATTGCCGTGAATACCGACAGCAACACGCATGAGCAT 60188 Query 63785 GTGCTGAGGTCTTTC 63799 ||||||||| || || Sbjct 60187 GTGCTGAGGCCTCTC 60173 >seq206 Length=170121 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||| |||||||||| || || | ||||| || || ||||| Sbjct 151454 CAGGCAAAGTCGGTGTGCAAGCCCTCGTCTCGGCTGATCAGCTCGTTGGAGAAGGTGAGG 151513 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct 151514 CCGGGCATCAGACCGCGCTTCTTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGAAGAAG 151573 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || || ||||||||||||| Sbjct 151574 ATGCCCTCGACGGCAGCAAAGGCAA 151598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814994129680