Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq130 134 2e-26 seq206 122 1e-22 >seq130 Length=202609 Score = 134 bits (148), Expect = 2e-26 Identities = 403/615 (66%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| || || | || ||| | | || || |||||| | || ||||| | ||| Sbjct 60783 TCGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTCGGCGGGGCACATAAGAGAC 60724 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 ||||| || | | || ||||| ||||| || || || || ||||| ||||| || Sbjct 60723 CACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGGGATCCAGAGAGCGTAGAAG 60664 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | || | ||| || || || ||||| || ||||||||| | | Sbjct 60663 AGCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCGGAGGTCGAGGAACTCAAAG 60604 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | || || ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 60603 ACGTCCGAGTGCCAGGGCTCGATGTAGATGGCAAAGGCACCGGGCCGCTTGTTGCCACCT 60544 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | || || |||||||| || || |||| | ||| || | || || ||||| Sbjct 60543 TGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 80219 ||| ||||| |||| || || || || ||||||| | | || | ||||| Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATGC-AGTGGATGTTGAGACC 60425 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || || | || ||| | ||||| || | || || ||||||||||| Sbjct 60424 GATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCTC 60365 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTC 80338 ||| || || ||||| | | || || || |||||||| | | | | || | Sbjct 60364 GATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGT-GTGC 60306 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | ||||| || | || || || || || || || | || || |||| | ||||| | Sbjct 60305 CGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGACATCAAGTTGTATG 60246 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGA--TGAATTCCTACCGCGACACGCATTAACAT 80456 ||||||| || || || || |||| ||||| || || || |||||||| | ||| Sbjct 60245 TCTCAATCGCCTTGTCGATGTC--ATTGCCGTGAATACCGACAGCAACACGCATGAGCAT 60188 Query 80457 GTGCTGAGGTCTTTC 80471 ||||||||| || || Sbjct 60187 GTGCTGAGGCCTCTC 60173 >seq206 Length=170121 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||| |||||||||| || || || |||||||| || ||||| Sbjct 151454 CAGGCAAAGTCGGTGTGCAAGCCCTCGTCTCGGCTGATCAGCTCGTTGGAGAAGGTGAGG 151513 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || |||||||| || || || || |||||| Sbjct 151514 CCGGGCATCAGACCGCGCTTCTTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGAAGAAG 151573 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || || || || || ||||||||||| || | ||| Sbjct 151574 ATGCCCTCGACGGCAGCAAAGGCAACGAGGCGCTC 151608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265828162840