Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq130 158 2e-33 seq206 138 2e-27 >seq130 Length=202609 Score = 158 bits (174), Expect = 2e-33 Identities = 347/515 (67%), Gaps = 4/515 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| | ||| ||| | ||||| |||||| || | ||||| | || | Sbjct 60473 ACCAACGGTGTCTCCAACGGCATCGTGCCCATGCTCCGAGTCTACAACAACACCGCAAGG 60532 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || || || ||||| || ||||| || || | ||| ||||| | || || ||| Sbjct 60533 TATGTCGACCAAGGTGGCAACAAGCGGCCCGGTGCCTTTGCCATCTACATCGAGCCCTGG 60592 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||||| ||||| || |||| | ||||| ||| |||| ||||||| || Sbjct 60593 CACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCATGGCAAGGAAGAGGTCCGC 60652 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | || | || || || |||||| | || || ||||||||||||| ||| | | Sbjct 60653 GCCCGTGAGCTCTTCTACGCTCTCTGGATCCCGGACCTGTTCATGAAGCGAGTCGAGCAG 60712 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| | ||| || |||||||||| | | ||||| || |||| || ||| Sbjct 60713 AACGGCGAGTGGTCTCTTATGTGCCCCGCCGAATGCCCCGGCCTTGCCGACGTCTATGGC 60772 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGT 97165 || ||||| ||||| |||| ||||||| ||||||| | || ||| || Sbjct 60773 GAGGAGTTCGAGGCTCTGTACCACAAGTACGAGCGCGAGGGCCGGGCCCGCCGCACG-GT 60831 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | |||| || ||| | || ||| | ||||||| |||||||| | || | Sbjct 60832 CAAGGC-CCAGAAGCTCTGGTACGCTATCCTCGAGGCTCAGACGGAGACTGGCAACCCAT 60890 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| | | || ||||| ||||| || | |||||||||| Sbjct 60891 TCATGCTCTACAAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCA 60950 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| || || |||||||| || | |||||| Sbjct 60951 AGTGCTCGAACCTCTGCACGGAGATCATTGAGTAC 60985 >seq206 Length=170121 Score = 138 bits (152), Expect = 2e-27 Identities = 394/597 (66%), Gaps = 23/597 (4%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||||| || | |||||| |||||||||| ||||||||||| || Sbjct 151770 GAGAACATTCACTCAGAGACGTACTCGCTCCTGATTGACACCTACATTCGCGACCCTGCT 151711 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGC 125374 ||||| | || ||||| |||| || || || | || ||| | | | || ||| Sbjct 151710 CAACGCGAGTAC---CTCTTCGACGCCATTGAGACCATCCCCGTCGTCAAGCAGAA-GGC 151655 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || |||||| ||| | || ||| ||| || | || || || Sbjct 151654 CGACTGGGCTCTCCGATGGATCTCCGACACGGACTCGACGTTCGCGGAGCGCCTCGTTGC 151595 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || ||||| |||||||||||||| || || || ||| |||| || |||||||| Sbjct 151594 CTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATTTTCTGGCTCAA 151535 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| || |||||||| || || | |||||| | || ||||||||||| Sbjct 151534 GAAGCGCGGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTGATCAGCCGAGACGAGGG 151475 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 | | ||| ||||||||| || ||||| || | | || |||| || | | Sbjct 151474 CTTGCACACCGACTTTGCCTGCCTCCTGTT---CAGCCACCT-----CCGAAAGCGGCCC 151423 Query 125615 CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCT 125674 || | || ||| || ||| | ||||| || |||| || || || | || || Sbjct 151422 CA-CCCGGACGTCGTCCTCCGCATCATCACCGAGGCTGTGACCATCGAGCAGGCCTTCCT 151364 Query 125675 AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 ||||| | || || ||| | || |||||||||| ||| ||| || ||||||| Sbjct 151363 CACCGACGCGCTCCCCGTCTCGCTCATCGGCATGAACTCGCGGCTCATGAGCCAGTACAT 151304 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGC 125791 ||||| || || || || || || || | | | ||| || |||| |||||||| Sbjct 151303 CGAGTTCGTTGCCGACCGCCTGCT---CGTTTCGCTCGGCAACGACAAGCACTACAACGC 151247 Query 125792 CAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 | || || || || || ||| | ||| || | |||| ||||| ||||| || Sbjct 151246 GAGCAACCCGTTCGACTTTATGGAGAACATCTCTTTGCAGGGCAAGACGAACTTCTT 151190 Score = 118 bits (130), Expect = 2e-21 Identities = 180/248 (73%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||||| || ||| |||| || Sbjct 152073 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCTGAGGAGATCGACTTG 152014 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||||| | | | | || | |||||| | || || Sbjct 152013 TCCAAGGACATGCACGACTGGGACAACAGGCTCAACGACAATGAGCGCCACTTCATCAGC 151954 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | ||||||||||| | ||| || || ||||||||||| ||||| ||||| || Sbjct 151953 CACGTCCTTGCCTTCTTTGCTGCCTCGGACGGTATCGTCAACGAGAATCTCGTTGA-GCG 151895 Query 125198 ATTC-TCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 |||| ||| ||| || || | | |||| ||||| ||||| ||||| ||||| Sbjct 151894 ATTCAGCTC-CGAGGTG--CAGGCCGCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCAT 151838 Query 125255 GAT-TGAG 125261 ||| |||| Sbjct 151837 GATGTGAG 151830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056133867560