Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq130 140 4e-28 seq206 122 1e-22 >seq130 Length=202609 Score = 140 bits (154), Expect = 4e-28 Identities = 415/633 (66%), Gaps = 8/633 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || | || | | | | || || ||||| | || ||||| | ||| Sbjct 60783 TCGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTCGGCGGGGCACATAAGAGAC 60724 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| |||| | || ||||| ||||| || || || || ||||| ||||| || Sbjct 60723 CACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGGGATCCAGAGAGCGTAGAAG 60664 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || || | || | || || || || ||||| || ||||||||| | | Sbjct 60663 AGCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCGGAGGTCGAGGAACTCAAAG 60604 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | || || ||||| || || | ||| ||||| | | || ||||| ||||| || || Sbjct 60603 ACGTCCGAGTGCCAGGGCTCGATGTAGATGGCAAAGGCACCGGGCCGCTTGTTGCCACCT 60544 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | || || |||||||| || || |||| | ||| || | || ||||| || Sbjct 60543 TGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 63496 | ||| |||||||||| || || || || ||||||| | | || | ||||| Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATGC-AGTGGATGTTGAGACC 60425 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || | || ||| | ||||| || | ||||| ||||| ||||| Sbjct 60424 GATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCTC 60365 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTC 63615 ||| || || ||||| | | || || || |||||||| | | | | || | Sbjct 60364 GATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGT-GTGC 60306 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675 | ||||| || | || || || || || || || | || || || | | ||||| | Sbjct 60305 CGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGACATCAAGTTGTATG 60246 Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACAT 63733 ||||||| || ||| || || |||| ||||| || || || |||||||| | ||| Sbjct 60245 TCTCAATCGCCTTGTCGATGTC--ATTGCCGTGAATACCGACAGCAACACGCATGAGCAT 60188 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||||||||| || || | | |||| ||| || Sbjct 60187 GTGCTGAGGCCTCTCGGCCACCTTGCCGTTGAT 60155 >seq206 Length=170121 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||| |||||||||| || || || |||||||| || ||||| Sbjct 151454 CAGGCAAAGTCGGTGTGCAAGCCCTCGTCTCGGCTGATCAGCTCGTTGGAGAAGGTGAGG 151513 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 151514 CCGGGCATCAGACCGCGCTTCTTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGAAGAAG 151573 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAA 33448 || || || || ||||||||||||| Sbjct 151574 ATGCCCTCGACGGCAGCAAAGGCAA 151598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944622555960