Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq125 125 6e-24 seq41 95.1 1e-14 seq59 89.7 4e-13 >seq125 Length=635640 Score = 125 bits (138), Expect = 6e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || || | ||| || ||||||||||| || ||||||||||||||| Sbjct 378612 CCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 378553 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || ||||| ||| | || || ||||| ||||| || Sbjct 378552 AAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGG 378493 Query 16829 ACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| |||| | | | ||| | ||| || | | | | |||||||||| ||| Sbjct 378492 ATGCCCTCCTTGTCCTGGATCTTGGT-CTTGACGTTGTCAATGGTGTCGCCGGACTCGAC 378434 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | |||||| || || || || ||||| |||||||| |||||||| |||| Sbjct 378433 CTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTTGT 378381 >seq41 Length=375347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | || || || |||||||| || |||||||||||||||| || | ||||| Sbjct 19640 AGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCC 19581 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || |||||||| ||||| || | |||||| ||||| Sbjct 19580 TCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19521 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||| | ||| || | | | | ||||| || | |||| || | |||||| || Sbjct 19520 TGAATCTTGGT-CTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGT 19462 Query 16903 TTTTCCGGTCAGCGTTTTGAC 16923 || ||||| || || ||||| Sbjct 19461 CTTGCCGGTGAGGGTCTTGAC 19441 >seq59 Length=598887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||| || | ||| ||||| Sbjct 73009 AGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCC 73068 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 || | || ||||| ||| | || || || || ||||| || | |||||| |||| | Sbjct 73069 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 73128 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||| | ||| || | | | | ||||| |||| |||| || | |||||| || Sbjct 73129 TGGATCTTGGT-CTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGT 73187 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||| || |||||||| Sbjct 73188 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086365849690