Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq239 140 2e-28 seq254 95.1 8e-15 seq59 89.7 3e-13 >seq239 Length=1103 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 496 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 555 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 556 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 590 >seq254 Length=1257 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||| ||||||||||||||||||||||||| | Sbjct 511 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTTACGGTACTTGTTCGCTATCGGTCTCTC 570 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 571 CCCAATATTTAGCTTTA 587 >seq59 Length=598887 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 6153 TCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTAC 6212 ||| ||| |||| ||| | ||||| || ||||| |||| ||||||||||||| Sbjct 568641 TCGCCCAGCATGGCTACCGTCAACGTCCGCCGCGATGTGCAGGACAAGTTCTACCGCTAC 568582 Query 6213 AAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATT 6272 || ||||||| || ||||| ||||||| |||||||||||||| || || ||||| Sbjct 568581 AAGATGCCGCTTCTCCAGACCAAGATCGAGGGCAAGGGAAACGGTATCAAGACGGTCATC 568522 Query 6273 GTCAACATGCCTGA 6286 | |||||| |||| Sbjct 568521 GCAAACATGTCTGA 568508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945848802061