Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq130 131 2e-25 >seq130 Length=202609 Score = 131 bits (144), Expect = 2e-25 Identities = 413/633 (65%), Gaps = 8/633 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || | || | | | || || || ||||| | || ||||| | ||| Sbjct 60783 TCGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTCGGCGGGGCACATAAGAGAC 60724 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| |||| | || ||||| ||||| || || || || ||||| ||||| || Sbjct 60723 CACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGGGATCCAGAGAGCGTAGAAG 60664 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | || | || || || || ||||| || ||||||||| | | Sbjct 60663 AGCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCGGAGGTCGAGGAACTCAAAG 60604 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || || ||||| || || | ||| ||||| | | || ||||| ||||| || || Sbjct 60603 ACGTCCGAGTGCCAGGGCTCGATGTAGATGGCAAAGGCACCGGGCCGCTTGTTGCCACCT 60544 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | || || |||||||| || || |||| | ||| || | || || ||||| Sbjct 60543 TGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 63351 ||| ||||| || | || || || || ||||||| | | || | ||||| Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATGC-AGTGGATGTTGAGACC 60425 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || | || ||| | ||||| || | || || ||||||||||| Sbjct 60424 GATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCTC 60365 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTC 63470 || || ||| ||||| | | || || || |||||||| | | | | || | Sbjct 60364 GATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGT-GTGC 60306 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530 | ||||| || | || || || || || || || | || || || | | ||||| | Sbjct 60305 CGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGACATCAAGTTGTATG 60246 Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACAT 63588 ||||||| || ||| || || |||| ||||| || || || |||||||| | ||| Sbjct 60245 TCTCAATCGCCTTGTCGATGTC--ATTGCCGTGAATACCGACAGCAACACGCATGAGCAT 60188 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||||||||| || || | | |||| ||| || Sbjct 60187 GTGCTGAGGCCTCTCGGCCACCTTGCCGTTGAT 60155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629378347600