Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq125 113 4e-20 seq59 100 2e-16 seq41 89.7 4e-13 >seq125 Length=635640 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || || || ||| |||| || || || || || Sbjct 378383 AAGATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCC 378442 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||| ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 378443 GGCGACACCATTGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCAGAC 378502 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||||||||| ||| | || || ||||||| | |||| ||| Sbjct 378503 CAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTAC 378562 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || |||||| | ||| | || | || | ||||| || Sbjct 378563 AACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGGCTCCGCGGCGG 378612 >seq59 Length=598887 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || ||||| || Sbjct 73220 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCCGGT 73161 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || || || || Sbjct 73160 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 73101 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| ||| | ||||| |||||| | | || |||||| Sbjct 73100 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTTGCGGACTACAAC 73041 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | ||| | || | || |||| || ||| Sbjct 73040 ATCCAGAAGGAGTCGACCCTCCATCTTGTGCTTCGCCTGCGTGGTGGT 72993 >seq41 Length=375347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| |||| || || ||||| | || ||| | ||| || |||| Sbjct 19453 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCGGGGGACACCATCGACAATGTCAAGACC 19512 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || || || || || || || || || |||||||| Sbjct 19513 AAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGGCTGATCTTCGCCGGCAAG 19572 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| |||||| | |||| |||||||| || || || || ||| Sbjct 19573 CAGCTTGAGGACGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCGACC 19626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726306791015