Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq125 138 3e-27 seq59 116 9e-21 seq41 114 3e-20 seq146 107 5e-18 >seq125 Length=635640 Score = 138 bits (152), Expect = 3e-27 Identities = 173/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || |||||||| | ||| || || ||||| || |||||||| Sbjct 378612 CCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 378553 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | ||||| |||||||| | || || || || ||||| |||||||| || ||||| Sbjct 378552 AAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGG---TCTGGC 378496 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || || |||||||| || | || ||||| || || | |||| || || Sbjct 378495 GGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCG 378436 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || ||||| ||||||||||| || || || |||||||| || |||||||| |||| Sbjct 378435 ACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTTGTT 378380 >seq59 Length=598887 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||| | || || || ||||| || ||||| || Sbjct 72994 CCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 73053 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || |||||||| || || || | ||| Sbjct 73054 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGG 73113 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || | || || || Sbjct 73114 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACC 73173 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || ||||||||||| |||||||| Sbjct 73174 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq41 Length=375347 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| || |||| || || || ||||| || |||||||| || ||||| ||||| Sbjct 19641 AAGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTC 19582 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 || | || || || ||||||||||| ||||| || |||||| || || || || Sbjct 19581 CTCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGG---TCTGGGGGGATGCCCTCCTT 19525 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || | || || || || || | || | ||| || || ||||| ||||| Sbjct 19524 GTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGAT 19465 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACG 288462 |||||| ||||| || ||||||||| Sbjct 19464 CGTCTTGCCGGTGAGGGTCTTGACG 19440 >seq146 Length=265622 Score = 107 bits (118), Expect = 5e-18 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | ||| || || || | || || || ||||| || ||||| Sbjct 40223 TGACCACCGCGGAGGCGAAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCC 40282 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| ||||| || | || || || |||||||| || || || || ||| Sbjct 40283 GCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTG---GTCT 40339 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || || |||||||| || | || ||||| || || | || | || Sbjct 40340 GGCGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGAC 40399 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || ||||| || || ||||| || ||||| |||||||| Sbjct 40400 TCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 40440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649397159418